SOM Cell

Model Type:
Cell
Neurolex IDs: None
Keywords: None
Publication: Dura-Bernal, et. al. (2017) Evolutionary algorithm optimization of biological learning parameters in a biomimetic neuroprosthesis.
Authors:
S Dura-Bernal   S A Neymotin   C C Kerr   S Sivagnanam   A Majumdar   J T Francis   W W Lytton  
Translators: Salvador Dura-Bernal   Adrian Quintana   Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001657
SOM.cell.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001657
Associated Channels: None
Associated Synapses: None
Associated Networks:
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Accommodating Wide AP Multi-Spikers (awMS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -56.00 mV
Rheobase Current Interval (0.12817, 0.16022] nA
Threshold Current Interval (8.14453, 8.20312] nA
Bias Current (to -80.00 mV) -1.0328 nA
Testing Temperature 36 (default) °C
Stability Interval [-10.0, 15.0] nA
AP 1-2 Amplitude Drop 0.0537 mV
AP 1 Steady State Amplitude Change 0.0310 mV
AP 1 Amplitude 60.0095 mV
AP 1 Width at Half Height 5.8300 ms
AP 1 Width (Peak To Trough) 16.5400 ms
AP 1 Rate of Change Peak to Trough -5.6888 mV/ms
AP 1 AHP Depth 34.0824 mV
AP2 Amplitude 59.9558 mV
AP2 Width at Half Height 5.8400 ms
AP 2 Width (Peak to Trough) 17.0500 ms
AP 2 Rate of Change Peak to Trough -5.5165 mV/ms
AP 2 AHP Depth 34.1001 mV
AP 1-2 Amplitude Change Percent -0.0895 %
AP 1-2 Half Width Change Percent 0.1715 %
AP 1-2 Rate of Change Peak to Trough Percent Change -3.0283 %
AP 1-2 AHP Depth Percent Change 0.0519 %
Input Resistance 38.6194 MΩ
AP 1 Delay Mean 144.9300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 364.0300 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 219.2000 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State 0.0000 %/ms
Accommodation at Steady State Mean -0.0919 %
Accommodation Rate Mean at Steady State 10.0000 ms
ISI CV 3269.3450
ISI Median 219.3000 ms
ISI Burst Mean Change 0.0913 %
Spike Rate (Strong Stimulation) 9.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 66.3100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 169.5700 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 104.2250 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2092.8800 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 80.7237 Hz
Single compartment, abstract, or point cells do not have morphology data.
Complexity Summary
State Equations 2
Optimal Time-Step 0.03123 ms
Relative Complexity 0.14 HH
Model Size
Sections 1
Compartments 1
State Equations 2
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.03123 ms
Optimal Time-Step Error 0.01 %
Optimal Time-Step Benchmark Run Time 0.14 HH
 
Maximum Stable Time-Step 1.0 ms
Maximum Stable Time-Step Error 0.58 %
Max. Stable Time-Step Benchmark Run Time 0.07 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 1553 Hz
CVODE Steps Per AP 590
CVODE Benchmark Run Time 0.22 HH
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