Primary visual area layer 4 aspiny 471077468 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 4
Keywords: Mus musculus, Pvalb-IRES-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001534
Cell_478513411.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001534
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Rapidly Adapting (RA)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -79.60 mV
Rheobase Current Interval (0.22659, 0.22888] nA
Threshold Current Interval (0.52734, 0.58594] nA
Bias Current (to -70.00 mV) 0.0896 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop N/A mV
AP 1 Steady State Amplitude Change N/A mV
AP 1 Amplitude 31.0268 mV
AP 1 Width at Half Height 20.0000 ms
AP 1 Width (Peak To Trough) 1.2300 ms
AP 1 Rate of Change Peak to Trough -35.1498 mV/ms
AP 1 AHP Depth 12.2074 mV
AP2 Amplitude N/A mV
AP2 Width at Half Height N/A ms
AP 2 Width (Peak to Trough) N/A ms
AP 2 Rate of Change Peak to Trough N/A mV/ms
AP 2 AHP Depth N/A mV
AP 1-2 Amplitude Change Percent N/A %
AP 1-2 Half Width Change Percent N/A %
AP 1-2 Rate of Change Peak to Trough Percent Change N/A %
AP 1-2 AHP Depth Percent Change N/A %
Input Resistance 88.9111 MΩ
AP 1 Delay Mean 8.1100 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean N/A ms
AP 2 Delay SD N/A ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean -100.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median N/A ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 0.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 1.3600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) N/A ms
AP 2 Delay SD (Strong Stimulation) N/A ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 5000.0000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8247.36 µm2
Number of Stems 9.0
Number of Bifurcations 24.0
Number of Branches 57.0
Overall Width 183.706 µm
Overall Height 238.913 µm
Overall Depth 43.96 µm
Average Diameter 0.457112 µm
Total Length 2443.97 µm
Total Surface 4066.39 µm2
Total Volume 2512.99 µm3
Max Euclidean Distance 196.856 µm
Max Path Distance 223.684 µm
Max Branch Order 4.0
Average Contraction 0.894379
Total Fragmentation 2025.0
Partition Asymmetry 0.444444
Average Rall's Ratio 3.63125
Average Bifurcation Angle Local 76.8296 °
Average Bifurcation Angle Remote 74.3105 °
Fractal Dimension 1.03405
Complexity Summary
State Equations 157
Optimal Time-Step 0.02437 ms
Relative Complexity 11.08 HH
Model Size
Sections 57
Compartments 129
State Equations 157
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02437 ms
Optimal Time-Step Error 2.98 %
Optimal Time-Step Benchmark Run Time 11.08 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 4.62 %
Max. Stable Time-Step Benchmark Run Time 8.44 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 7818 Hz
CVODE Steps Per AP 1038
CVODE Benchmark Run Time 32.31 HH
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