Primary visual area layer 6a spiny 471410185 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 6a
Keywords: Mus musculus, Ntsr1-Cre_GN220
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001516
Cell_478513396.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001516
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -90.36 mV
Rheobase Current Interval (0.14420, 0.14740] nA
Threshold Current Interval (0.76172, 0.82031] nA
Bias Current (to -80.00 mV) 0.0482 nA
Testing Temperature 34.0 °C
Stability Interval [-2.5, 15.0] nA
AP 1-2 Amplitude Drop -1.2767 mV
AP 1 Steady State Amplitude Change 0.7056 mV
AP 1 Amplitude 56.0277 mV
AP 1 Width at Half Height 0.5900 ms
AP 1 Width (Peak To Trough) 8.3100 ms
AP 1 Rate of Change Peak to Trough -8.5013 mV/ms
AP 1 AHP Depth 14.6182 mV
AP2 Amplitude 57.3044 mV
AP2 Width at Half Height 0.6000 ms
AP 2 Width (Peak to Trough) 7.4200 ms
AP 2 Rate of Change Peak to Trough -9.8685 mV/ms
AP 2 AHP Depth 15.9197 mV
AP 1-2 Amplitude Change Percent 2.2788 %
AP 1-2 Half Width Change Percent 1.6949 %
AP 1-2 Rate of Change Peak to Trough Percent Change 16.0818 %
AP 1-2 AHP Depth Percent Change 8.9030 %
Input Resistance 168.0801 MΩ
AP 1 Delay Mean 37.8900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 68.6000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 33.4800 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 22.2222 %
Steady State Accommodation Mean 22.2222 %
Accommodation Rate to Steady State 0.2119 %/ms
Accommodation at Steady State Mean -20.1505 %
Accommodation Rate Mean at Steady State 19.6249 ms
ISI CV 14.7692
ISI Median 37.1100 ms
ISI Burst Mean Change 18.0397 %
Spike Rate (Strong Stimulation) 61.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 8.7100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 20.2400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 12.6750 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2049.9700 ms
Frequency Filter Type High-Pass
Frequency Filter Pass Above 31.6326 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 4933.61 µm2
Number of Stems 8.0
Number of Bifurcations 18.0
Number of Branches 44.0
Overall Width 157.78 µm
Overall Height 349.826 µm
Overall Depth 90.75 µm
Average Diameter 0.508356 µm
Total Length 2481.31 µm
Total Surface 4341.79 µm2
Total Volume 1825.15 µm3
Max Euclidean Distance 385.662 µm
Max Path Distance 434.491 µm
Max Branch Order 7.0
Average Contraction 0.86486
Total Fragmentation 2008.0
Partition Asymmetry 0.44709
Average Rall's Ratio 1.89
Average Bifurcation Angle Local 70.532 °
Average Bifurcation Angle Remote 71.9979 °
Fractal Dimension 1.04338
Complexity Summary
State Equations 142
Optimal Time-Step 0.00757 ms
Relative Complexity 20.50 HH
Model Size
Sections 44
Compartments 126
State Equations 142
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00757 ms
Optimal Time-Step Error 0.15 %
Optimal Time-Step Benchmark Run Time 20.50 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.18 %
Max. Stable Time-Step Benchmark Run Time 38.79 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 10797 Hz
CVODE Steps Per AP 860
CVODE Benchmark Run Time 19.80 HH
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