Primary visual area layer 4 spiny 314900022 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 4
Keywords: Mus musculus, Scnn1a-Tg3-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001514
Cell_473862845.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001514
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Rapidly Adapting (RA)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -87.31 mV
Rheobase Current Interval (0.06409, 0.06592] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -80.00 mV) 0.0315 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop N/A mV
AP 1 Steady State Amplitude Change N/A mV
AP 1 Amplitude 67.2616 mV
AP 1 Width at Half Height 0.7300 ms
AP 1 Width (Peak To Trough) 45.0400 ms
AP 1 Rate of Change Peak to Trough -2.4732 mV/ms
AP 1 AHP Depth 44.1325 mV
AP2 Amplitude N/A mV
AP2 Width at Half Height N/A ms
AP 2 Width (Peak to Trough) N/A ms
AP 2 Rate of Change Peak to Trough N/A mV/ms
AP 2 AHP Depth N/A mV
AP 1-2 Amplitude Change Percent N/A %
AP 1-2 Half Width Change Percent N/A %
AP 1-2 Rate of Change Peak to Trough Percent Change N/A %
AP 1-2 AHP Depth Percent Change N/A %
Input Resistance 223.8764 MΩ
AP 1 Delay Mean 25.9900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean N/A ms
AP 2 Delay SD N/A ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean -100.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median N/A ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 1.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 8.4200 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 1915.5500 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 2040.1400 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8510.17 µm2
Number of Stems 6.0
Number of Bifurcations 20.0
Number of Branches 46.0
Overall Width 173.494 µm
Overall Height 458.539 µm
Overall Depth 88.07 µm
Average Diameter 0.453626 µm
Total Length 2166.32 µm
Total Surface 3597.5 µm2
Total Volume 2531.24 µm3
Max Euclidean Distance 408.932 µm
Max Path Distance 489.441 µm
Max Branch Order 7.0
Average Contraction 0.897502
Total Fragmentation 1712.0
Partition Asymmetry 0.469048
Average Rall's Ratio 2.715
Average Bifurcation Angle Local 81.2151 °
Average Bifurcation Angle Remote 80.0662 °
Fractal Dimension 1.03325
Complexity Summary
State Equations 130
Optimal Time-Step 0.00775 ms
Relative Complexity 18.84 HH
Model Size
Sections 46
Compartments 114
State Equations 130
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.01 %
Optimal Time-Step Benchmark Run Time 18.84 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.07 %
Max. Stable Time-Step Benchmark Run Time 36.50 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 19586 Hz
CVODE Steps Per AP 4811
CVODE Benchmark Run Time 65.00 HH
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