Postrhinal area layer 5 aspiny 323834998 Cell

Model Type:
Cell
Neurolex IDs: Visual cortex
Keywords: Mus musculus, Scnn1a-Tg3-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001512
Cell_472455509.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001512
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Rapidly Adapting (RA)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -86.62 mV
Rheobase Current Interval (0.05951, 0.06180] nA
Threshold Current Interval (0.52734, 0.58594] nA
Bias Current (to -80.00 mV) 0.0129 nA
Testing Temperature 34.0 °C
Stability Interval [-4.0625, 15.0] nA
AP 1-2 Amplitude Drop N/A mV
AP 1 Steady State Amplitude Change N/A mV
AP 1 Amplitude 75.1704 mV
AP 1 Width at Half Height 0.5400 ms
AP 1 Width (Peak To Trough) 57.9800 ms
AP 1 Rate of Change Peak to Trough -2.1261 mV/ms
AP 1 AHP Depth 48.0986 mV
AP2 Amplitude N/A mV
AP2 Width at Half Height N/A ms
AP 2 Width (Peak to Trough) N/A ms
AP 2 Rate of Change Peak to Trough N/A mV/ms
AP 2 AHP Depth N/A mV
AP 1-2 Amplitude Change Percent N/A %
AP 1-2 Half Width Change Percent N/A %
AP 1-2 Rate of Change Peak to Trough Percent Change N/A %
AP 1-2 AHP Depth Percent Change N/A %
Input Resistance 506.0856 MΩ
AP 1 Delay Mean 36.0500 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean N/A ms
AP 2 Delay SD N/A ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean -100.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median N/A ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 0.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 13.7400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) N/A ms
AP 2 Delay SD (Strong Stimulation) N/A ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 3054.8800 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8681.88 µm2
Number of Stems 6.0
Number of Bifurcations 35.0
Number of Branches 76.0
Overall Width 291.141 µm
Overall Height 369.852 µm
Overall Depth 115.95 µm
Average Diameter 0.416395 µm
Total Length 4939.93 µm
Total Surface 6989.09 µm2
Total Volume 2908.23 µm3
Max Euclidean Distance 298.663 µm
Max Path Distance 405.205 µm
Max Branch Order 7.0
Average Contraction 0.849972
Total Fragmentation 3637.0
Partition Asymmetry 0.500268
Average Rall's Ratio 2.14214
Average Bifurcation Angle Local 86.3038 °
Average Bifurcation Angle Remote 73.5734 °
Fractal Dimension 1.0514
Complexity Summary
State Equations 284
Optimal Time-Step 0.02359 ms
Relative Complexity 16.56 HH
Model Size
Sections 76
Compartments 256
State Equations 284
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02359 ms
Optimal Time-Step Error 0.03 %
Optimal Time-Step Benchmark Run Time 16.56 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 3.15 %
Max. Stable Time-Step Benchmark Run Time 12.20 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 4165 Hz
CVODE Steps Per AP 4653
CVODE Benchmark Run Time 130.18 HH
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