Primary visual area layer 5 spiny 487664663 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Rbp4-Cre_KL100
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001510
Cell_488462820.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001510
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Accommodating Wide AP Multi-Spikers (awMS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -79.51 mV
Rheobase Current Interval (0.04028, 0.04280] nA
Threshold Current Interval (0.58594, 0.64453] nA
Bias Current (to -70.00 mV) 0.0237 nA
Testing Temperature 34.0 °C
Stability Interval [-3.125, 15.0] nA
AP 1-2 Amplitude Drop 0.5054 mV
AP 1 Steady State Amplitude Change 1.3206 mV
AP 1 Amplitude 58.8889 mV
AP 1 Width at Half Height 0.7200 ms
AP 1 Width (Peak To Trough) 4.0500 ms
AP 1 Rate of Change Peak to Trough -17.5875 mV/ms
AP 1 AHP Depth 12.3404 mV
AP2 Amplitude 58.3834 mV
AP2 Width at Half Height 0.7200 ms
AP 2 Width (Peak to Trough) 17.1600 ms
AP 2 Rate of Change Peak to Trough -4.1212 mV/ms
AP 2 AHP Depth 12.3367 mV
AP 1-2 Amplitude Change Percent -0.8583 %
AP 1-2 Half Width Change Percent -0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -76.5673 %
AP 1-2 AHP Depth Percent Change -0.0295 %
Input Resistance 310.8663 MΩ
AP 1 Delay Mean 99.0700 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 134.5400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 48.4500 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -25.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1363 %/ms
Accommodation at Steady State Mean -82.7488 %
Accommodation Rate Mean at Steady State 99.4388 ms
ISI CV 3.5585
ISI Median 148.4400 ms
ISI Burst Mean Change 73.1886 %
Spike Rate (Strong Stimulation) 12.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 32.0400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 54.9800 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 59.9500 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2136.4600 ms
Frequency Filter Type High-Pass
Frequency Filter Pass Above 67.0000 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 10399.5 µm2
Number of Stems 10.0
Number of Bifurcations 46.0
Number of Branches 102.0
Overall Width 341.211 µm
Overall Height 739.008 µm
Overall Depth 70.78 µm
Average Diameter 0.436243 µm
Total Length 5240.66 µm
Total Surface 7834.1 µm2
Total Volume 3542.47 µm3
Max Euclidean Distance 699.224 µm
Max Path Distance 876.806 µm
Max Branch Order 16.0
Average Contraction 0.929034
Total Fragmentation 4225.0
Partition Asymmetry 0.520016
Average Rall's Ratio 2.42545
Average Bifurcation Angle Local 73.9838 °
Average Bifurcation Angle Remote 72.8131 °
Fractal Dimension 1.01558
Complexity Summary
State Equations 284
Optimal Time-Step 0.01106 ms
Relative Complexity 28.28 HH
Model Size
Sections 102
Compartments 268
State Equations 284
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.01106 ms
Optimal Time-Step Error 0.41 %
Optimal Time-Step Benchmark Run Time 28.28 HH
 
Maximum Stable Time-Step 0.125 ms
Maximum Stable Time-Step Error 1.74 %
Max. Stable Time-Step Benchmark Run Time 39.10 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 11597 Hz
CVODE Steps Per AP 505
CVODE Benchmark Run Time 34.26 HH
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