Primary visual area layer 6a spiny 471819401 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 6a
Keywords: Mus musculus, Ntsr1-Cre_GN220
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001506
Cell_478513398.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001506
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -91.03 mV
Rheobase Current Interval (0.23071, 0.23438] nA
Threshold Current Interval (0.87891, 0.93750] nA
Bias Current (to -80.00 mV) 0.0711 nA
Testing Temperature 34.0 °C
Stability Interval [-2.8125, 15.0] nA
AP 1-2 Amplitude Drop 8.8639 mV
AP 1 Steady State Amplitude Change 16.1653 mV
AP 1 Amplitude 70.9625 mV
AP 1 Width at Half Height 0.5800 ms
AP 1 Width (Peak To Trough) 3.2500 ms
AP 1 Rate of Change Peak to Trough -25.9296 mV/ms
AP 1 AHP Depth 13.3087 mV
AP2 Amplitude 62.0986 mV
AP2 Width at Half Height 0.6000 ms
AP 2 Width (Peak to Trough) 4.8400 ms
AP 2 Rate of Change Peak to Trough -15.5810 mV/ms
AP 2 AHP Depth 13.3133 mV
AP 1-2 Amplitude Change Percent -12.4910 %
AP 1-2 Half Width Change Percent 3.4483 %
AP 1-2 Rate of Change Peak to Trough Percent Change -39.9105 %
AP 1-2 AHP Depth Percent Change 0.0346 %
Input Resistance 155.3994 MΩ
AP 1 Delay Mean 17.0200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 34.8200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 18.9150 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -58.3333 %
Steady State Accommodation Mean -58.3333 %
Accommodation Rate to Steady State -0.1408 %/ms
Accommodation at Steady State Mean -91.9519 %
Accommodation Rate Mean at Steady State 233.3345 ms
ISI CV 2.5217
ISI Median 72.4950 ms
ISI Burst Mean Change 12.5281 %
Spike Rate (Strong Stimulation) 32.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.5100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 12.5300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.4650 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2035.0500 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 119.8595 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7125.86 µm2
Number of Stems 6.0
Number of Bifurcations 24.0
Number of Branches 54.0
Overall Width 137.465 µm
Overall Height 449.285 µm
Overall Depth 80.65 µm
Average Diameter 0.443384 µm
Total Length 2759.67 µm
Total Surface 4355.04 µm2
Total Volume 2275.12 µm3
Max Euclidean Distance 432.388 µm
Max Path Distance 544.193 µm
Max Branch Order 10.0
Average Contraction 0.841186
Total Fragmentation 2424.0
Partition Asymmetry 0.638889
Average Rall's Ratio 2.26083
Average Bifurcation Angle Local 52.682 °
Average Bifurcation Angle Remote 71.5255 °
Fractal Dimension 1.05133
Complexity Summary
State Equations 162
Optimal Time-Step 0.00774 ms
Relative Complexity 23.03 HH
Model Size
Sections 54
Compartments 146
State Equations 162
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00774 ms
Optimal Time-Step Error 0.09 %
Optimal Time-Step Benchmark Run Time 23.03 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.36 %
Max. Stable Time-Step Benchmark Run Time 44.56 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 10192 Hz
CVODE Steps Per AP 1047
CVODE Benchmark Run Time 24.22 HH
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