Primary visual area layer 6a aspiny 313862306 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 6a
Keywords: Mus musculus, Sst-IRES-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001503
Cell_472440759.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001503
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -88.64 mV
Rheobase Current Interval (0.02563, 0.02747] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -80.00 mV) 0.0138 nA
Testing Temperature 34.0 °C
Stability Interval [-2.8125, 15.0] nA
AP 1-2 Amplitude Drop 0.2005 mV
AP 1 Steady State Amplitude Change 0.9801 mV
AP 1 Amplitude 69.3595 mV
AP 1 Width at Half Height 0.5300 ms
AP 1 Width (Peak To Trough) 3.0800 ms
AP 1 Rate of Change Peak to Trough -26.1770 mV/ms
AP 1 AHP Depth 11.2656 mV
AP2 Amplitude 69.1590 mV
AP2 Width at Half Height 0.5300 ms
AP 2 Width (Peak to Trough) 3.1700 ms
AP 2 Rate of Change Peak to Trough -25.4502 mV/ms
AP 2 AHP Depth 11.5181 mV
AP 1-2 Amplitude Change Percent -0.2891 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.7765 %
AP 1-2 AHP Depth Percent Change 2.2413 %
Input Resistance 631.8725 MΩ
AP 1 Delay Mean 72.4900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 84.9000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 14.0000 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -61.5385 %
Steady State Accommodation Mean -69.2308 %
Accommodation Rate to Steady State -0.0982 %/ms
Accommodation at Steady State Mean -91.6857 %
Accommodation Rate Mean at Steady State 326.2798 ms
ISI CV 1.9000
ISI Median 61.4400 ms
ISI Burst Mean Change 25.6245 %
Spike Rate (Strong Stimulation) 24.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 25.6300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 33.0300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 7.5350 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2075.8600 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3376.95 µm2
Number of Stems 7.0
Number of Bifurcations 16.0
Number of Branches 39.0
Overall Width 208.589 µm
Overall Height 276.47 µm
Overall Depth 86.04 µm
Average Diameter 0.487131 µm
Total Length 2608.48 µm
Total Surface 4311.57 µm2
Total Volume 1407.54 µm3
Max Euclidean Distance 273.883 µm
Max Path Distance 310.994 µm
Max Branch Order 4.0
Average Contraction 0.880672
Total Fragmentation 2178.0
Partition Asymmetry 0.458333
Average Rall's Ratio 2.63167
Average Bifurcation Angle Local 51.1255 °
Average Bifurcation Angle Remote 62.7938 °
Fractal Dimension 1.02853
Complexity Summary
State Equations 163
Optimal Time-Step 0.02613 ms
Relative Complexity 10.12 HH
Model Size
Sections 39
Compartments 135
State Equations 163
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02613 ms
Optimal Time-Step Error 1.96 %
Optimal Time-Step Benchmark Run Time 10.12 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 2.60 %
Max. Stable Time-Step Benchmark Run Time 8.26 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 4974 Hz
CVODE Steps Per AP 1326
CVODE Benchmark Run Time 31.69 HH
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