Primary visual area layer 6a spiny 471786879 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 6a
Keywords: Mus musculus, Ntsr1-Cre_GN220
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001498
Cell_480632594.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001498
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -89.82 mV
Rheobase Current Interval (0.20874, 0.21240] nA
Threshold Current Interval (0.87891, 0.93750] nA
Bias Current (to -80.00 mV) 0.0669 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 3.8587 mV
AP 1 Steady State Amplitude Change 6.0456 mV
AP 1 Amplitude 80.6337 mV
AP 1 Width at Half Height 0.7600 ms
AP 1 Width (Peak To Trough) 6.6400 ms
AP 1 Rate of Change Peak to Trough -13.6180 mV/ms
AP 1 AHP Depth 9.7897 mV
AP2 Amplitude 76.7750 mV
AP2 Width at Half Height 0.7600 ms
AP 2 Width (Peak to Trough) 6.7800 ms
AP 2 Rate of Change Peak to Trough -13.1807 mV/ms
AP 2 AHP Depth 12.5901 mV
AP 1-2 Amplitude Change Percent -4.7855 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -3.2111 %
AP 1-2 AHP Depth Percent Change 28.6055 %
Input Resistance 137.4526 MΩ
AP 1 Delay Mean 22.4800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 41.8000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 21.5450 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -30.7692 %
Steady State Accommodation Mean -23.0769 %
Accommodation Rate to Steady State -0.0615 %/ms
Accommodation at Steady State Mean -60.9113 %
Accommodation Rate Mean at Steady State 177.5191 ms
ISI CV 5.6965
ISI Median 42.1400 ms
ISI Burst Mean Change 23.0331 %
Spike Rate (Strong Stimulation) 51.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 5.1500 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 13.0000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.1100 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2072.6400 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8713.97 µm2
Number of Stems 8.0
Number of Bifurcations 31.0
Number of Branches 70.0
Overall Width 194.435 µm
Overall Height 872.309 µm
Overall Depth 49.68 µm
Average Diameter 0.587142 µm
Total Length 3763.27 µm
Total Surface 7498.95 µm2
Total Volume 3432.14 µm3
Max Euclidean Distance 846.798 µm
Max Path Distance 946.099 µm
Max Branch Order 15.0
Average Contraction 0.856002
Total Fragmentation 3209.0
Partition Asymmetry 0.586658
Average Rall's Ratio 1.775
Average Bifurcation Angle Local 64.9418 °
Average Bifurcation Angle Remote 70.8312 °
Fractal Dimension 1.04621
Complexity Summary
State Equations 204
Optimal Time-Step 0.00787 ms
Relative Complexity 29.07 HH
Model Size
Sections 70
Compartments 188
State Equations 204
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00787 ms
Optimal Time-Step Error 0.09 %
Optimal Time-Step Benchmark Run Time 29.07 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.95 %
Max. Stable Time-Step Benchmark Run Time 57.21 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 11277 Hz
CVODE Steps Per AP 631
CVODE Benchmark Run Time 26.47 HH
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