Anterolateral visual area layer 4 aspiny 321923685 Cell

Model Type:
Cell
Neurolex IDs: Anterolateral visual area layer 4
Keywords: Mus musculus, Nr5a1-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001484
Cell_478513224.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001484
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -87.34 mV
Rheobase Current Interval (0.09384, 0.09613] nA
Threshold Current Interval (0.52734, 0.58594] nA
Bias Current (to -80.00 mV) 0.0234 nA
Testing Temperature 34.0 °C
Stability Interval [-3.4375, 15.0] nA
AP 1-2 Amplitude Drop -0.7349 mV
AP 1 Steady State Amplitude Change -1.0090 mV
AP 1 Amplitude 44.1298 mV
AP 1 Width at Half Height 0.3800 ms
AP 1 Width (Peak To Trough) 2.4100 ms
AP 1 Rate of Change Peak to Trough -26.8869 mV/ms
AP 1 AHP Depth 20.6676 mV
AP2 Amplitude 44.8648 mV
AP2 Width at Half Height 0.4000 ms
AP 2 Width (Peak to Trough) 2.4200 ms
AP 2 Rate of Change Peak to Trough -27.2876 mV/ms
AP 2 AHP Depth 21.1711 mV
AP 1-2 Amplitude Change Percent 1.6654 %
AP 1-2 Half Width Change Percent 5.2632 %
AP 1-2 Rate of Change Peak to Trough Percent Change 1.4902 %
AP 1-2 AHP Depth Percent Change 2.4366 %
Input Resistance 320.4515 MΩ
AP 1 Delay Mean 25.8400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 43.5000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 19.0650 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 5.2632 %
Steady State Accommodation Mean 10.5263 %
Accommodation Rate to Steady State 0.1646 %/ms
Accommodation at Steady State Mean -9.5968 %
Accommodation Rate Mean at Steady State 0.1668 ms
ISI CV 62.3666
ISI Median 19.4400 ms
ISI Burst Mean Change 15.9117 %
Spike Rate (Strong Stimulation) 112.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 7.7000 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 15.4400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.8500 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2042.0100 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6213.91 µm2
Number of Stems 8.0
Number of Bifurcations 15.0
Number of Branches 38.0
Overall Width 207.369 µm
Overall Height 302.506 µm
Overall Depth 70.02 µm
Average Diameter 0.385145 µm
Total Length 2339.82 µm
Total Surface 3280.5 µm2
Total Volume 1865.13 µm3
Max Euclidean Distance 217.928 µm
Max Path Distance 279.218 µm
Max Branch Order 4.0
Average Contraction 0.893162
Total Fragmentation 1938.0
Partition Asymmetry 0.311111
Average Rall's Ratio 1.95375
Average Bifurcation Angle Local 67.0429 °
Average Bifurcation Angle Remote 68.542 °
Fractal Dimension 1.03129
Complexity Summary
State Equations 148
Optimal Time-Step 0.02378 ms
Relative Complexity 10.67 HH
Model Size
Sections 38
Compartments 120
State Equations 148
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02378 ms
Optimal Time-Step Error 2.58 %
Optimal Time-Step Benchmark Run Time 10.67 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 3.89 %
Max. Stable Time-Step Benchmark Run Time 7.93 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 6045 Hz
CVODE Steps Per AP 1051
CVODE Benchmark Run Time 27.63 HH
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