Primary visual area layer 5 aspiny 323475862 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Sst-IRES-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001483
Cell_478513459.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001483
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -82.26 mV
Rheobase Current Interval (0.05127, 0.05310] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -70.00 mV) 0.0420 nA
Testing Temperature 34.0 °C
Stability Interval [-4.375, 15.0] nA
AP 1-2 Amplitude Drop 0.8541 mV
AP 1 Steady State Amplitude Change 1.5382 mV
AP 1 Amplitude 54.0081 mV
AP 1 Width at Half Height 0.5100 ms
AP 1 Width (Peak To Trough) 3.2000 ms
AP 1 Rate of Change Peak to Trough -22.9880 mV/ms
AP 1 AHP Depth 19.5536 mV
AP2 Amplitude 53.1540 mV
AP2 Width at Half Height 0.5200 ms
AP 2 Width (Peak to Trough) 3.5200 ms
AP 2 Rate of Change Peak to Trough -20.9670 mV/ms
AP 2 AHP Depth 20.6499 mV
AP 1-2 Amplitude Change Percent -1.5815 %
AP 1-2 Half Width Change Percent 1.9608 %
AP 1-2 Rate of Change Peak to Trough Percent Change -8.7916 %
AP 1-2 AHP Depth Percent Change 5.6067 %
Input Resistance 261.5832 MΩ
AP 1 Delay Mean 32.9200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 77.3400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 110.2500 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -66.6667 %
Steady State Accommodation Mean -66.6667 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean -88.8423 %
Accommodation Rate Mean at Steady State 218.6237 ms
ISI CV 2.5332
ISI Median 322.7000 ms
ISI Burst Mean Change 296.3980 %
Spike Rate (Strong Stimulation) 10.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 11.9700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 24.5900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 19.5400 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2038.1800 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5277.73 µm2
Number of Stems 7.0
Number of Bifurcations 13.0
Number of Branches 33.0
Overall Width 205.352 µm
Overall Height 236.937 µm
Overall Depth 63.55 µm
Average Diameter 0.400625 µm
Total Length 1654.78 µm
Total Surface 2494.92 µm2
Total Volume 1563.55 µm3
Max Euclidean Distance 197.941 µm
Max Path Distance 239.463 µm
Max Branch Order 6.0
Average Contraction 0.892037
Total Fragmentation 1338.0
Partition Asymmetry 0.576923
Average Rall's Ratio 2.28857
Average Bifurcation Angle Local 80.2532 °
Average Bifurcation Angle Remote 43.8802 °
Fractal Dimension 1.02447
Complexity Summary
State Equations 106
Optimal Time-Step 0.02579 ms
Relative Complexity 9.20 HH
Model Size
Sections 34
Compartments 78
State Equations 106
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02579 ms
Optimal Time-Step Error 1.20 %
Optimal Time-Step Benchmark Run Time 9.20 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 2.31 %
Max. Stable Time-Step Benchmark Run Time 7.41 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 4085 Hz
CVODE Steps Per AP 1216
CVODE Benchmark Run Time 25.34 HH
Website & Images Copyright NeuroML © 2019 For questions: Contact us Links: Search Test |  ModelDB WS