Primary visual area layer 6a aspiny 488504814 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 6a
Keywords: Mus musculus, Rorb-IRES2-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001482
Cell_489931963.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001482
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -87.35 mV
Rheobase Current Interval (0.29846, 0.30029] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -80.00 mV) 0.0234 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop 3.7044 mV
AP 1 Steady State Amplitude Change 0.1162 mV
AP 1 Amplitude 39.4530 mV
AP 1 Width at Half Height 0.3200 ms
AP 1 Width (Peak To Trough) 1.3100 ms
AP 1 Rate of Change Peak to Trough -41.6197 mV/ms
AP 1 AHP Depth 15.0689 mV
AP2 Amplitude 35.7486 mV
AP2 Width at Half Height 0.3500 ms
AP 2 Width (Peak to Trough) 1.3700 ms
AP 2 Rate of Change Peak to Trough -36.3899 mV/ms
AP 2 AHP Depth 14.1056 mV
AP 1-2 Amplitude Change Percent -9.3894 %
AP 1-2 Half Width Change Percent 9.3750 %
AP 1-2 Rate of Change Peak to Trough Percent Change -12.5657 %
AP 1-2 AHP Depth Percent Change -6.3924 %
Input Resistance 237.1857 MΩ
AP 1 Delay Mean 2.6900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 7.8900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 5.1050 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State 0.0000 %/ms
Accommodation at Steady State Mean -9.9090 %
Accommodation Rate Mean at Steady State 31.1094 ms
ISI CV 84.0647
ISI Median 5.4000 ms
ISI Burst Mean Change -3.6538 %
Spike Rate (Strong Stimulation) 0.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.8000 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) N/A ms
AP 2 Delay SD (Strong Stimulation) N/A ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 5000.0000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6260.46 µm2
Number of Stems 9.0
Number of Bifurcations 20.0
Number of Branches 49.0
Overall Width 201.398 µm
Overall Height 336.823 µm
Overall Depth 40.21 µm
Average Diameter 0.530164 µm
Total Length 2534.88 µm
Total Surface 4658.7 µm2
Total Volume 2196.13 µm3
Max Euclidean Distance 220.441 µm
Max Path Distance 271.265 µm
Max Branch Order 5.0
Average Contraction 0.91661
Total Fragmentation 2088.0
Partition Asymmetry 0.53
Average Rall's Ratio 2.24727
Average Bifurcation Angle Local 65.1617 °
Average Bifurcation Angle Remote 69.1519 °
Fractal Dimension 1.02336
Complexity Summary
State Equations 155
Optimal Time-Step 0.02499 ms
Relative Complexity 10.35 HH
Model Size
Sections 49
Compartments 127
State Equations 155
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02499 ms
Optimal Time-Step Error 3.64 %
Optimal Time-Step Benchmark Run Time 10.35 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 7.93 %
Max. Stable Time-Step Benchmark Run Time 8.08 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 4668 Hz
CVODE Steps Per AP 1106
CVODE Benchmark Run Time 26.74 HH
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