Primary visual area layer 4 spiny 483020137 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 4
Keywords: Mus musculus, Nr5a1-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001477
Cell_485507735.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001477
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -95.41 mV
Rheobase Current Interval (0.11330, 0.11536] nA
Threshold Current Interval (0.46875, 0.52734] nA
Bias Current (to -80.00 mV) 0.0742 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 2.4896 mV
AP 1 Steady State Amplitude Change 7.9853 mV
AP 1 Amplitude 79.7726 mV
AP 1 Width at Half Height 0.7500 ms
AP 1 Width (Peak To Trough) 5.6400 ms
AP 1 Rate of Change Peak to Trough -16.9901 mV/ms
AP 1 AHP Depth 16.0517 mV
AP2 Amplitude 77.2831 mV
AP2 Width at Half Height 0.7400 ms
AP 2 Width (Peak to Trough) 5.4400 ms
AP 2 Rate of Change Peak to Trough -17.5327 mV/ms
AP 2 AHP Depth 18.0949 mV
AP 1-2 Amplitude Change Percent -3.1208 %
AP 1-2 Half Width Change Percent -1.3333 %
AP 1-2 Rate of Change Peak to Trough Percent Change 3.1935 %
AP 1-2 AHP Depth Percent Change 12.7290 %
Input Resistance 205.1493 MΩ
AP 1 Delay Mean 18.8700 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 41.7700 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 23.6800 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -66.6667 %
Steady State Accommodation Mean -55.5556 %
Accommodation Rate to Steady State -0.1514 %/ms
Accommodation at Steady State Mean -91.1859 %
Accommodation Rate Mean at Steady State 214.4709 ms
ISI CV 2.5735
ISI Median 100.3100 ms
ISI Burst Mean Change 6.8122 %
Spike Rate (Strong Stimulation) 47.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.6800 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 14.3500 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 10.5450 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2043.1300 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 120.8838 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 1671.43 µm2
Number of Stems 7.0
Number of Bifurcations 20.0
Number of Branches 47.0
Overall Width 142.806 µm
Overall Height 439.355 µm
Overall Depth 52.11 µm
Average Diameter 0.546846 µm
Total Length 2058.96 µm
Total Surface 3746.97 µm2
Total Volume 1000.52 µm3
Max Euclidean Distance 393.941 µm
Max Path Distance 440.342 µm
Max Branch Order 4.0
Average Contraction 0.908541
Total Fragmentation 1706.0
Partition Asymmetry 0.458333
Average Rall's Ratio 2.17643
Average Bifurcation Angle Local 73.9476 °
Average Bifurcation Angle Remote 74.7963 °
Fractal Dimension 1.02461
Complexity Summary
State Equations 123
Optimal Time-Step 0.00780 ms
Relative Complexity 18.60 HH
Model Size
Sections 47
Compartments 107
State Equations 123
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00780 ms
Optimal Time-Step Error 0.14 %
Optimal Time-Step Benchmark Run Time 18.60 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.66 %
Max. Stable Time-Step Benchmark Run Time 36.25 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13790 Hz
CVODE Steps Per AP 975
CVODE Benchmark Run Time 22.45 HH
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