Postrhinal area layer 5 aspiny 464198958 Cell

Model Type:
Cell
Neurolex IDs: Visual cortex
Keywords: Mus musculus, Sst-IRES-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001474
Cell_472450023.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001474
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -80.61 mV
Rheobase Current Interval (0.04463, 0.04578] nA
Threshold Current Interval (0.23438, 0.29297] nA
Bias Current (to -70.00 mV) 0.0438 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 3.0398 mV
AP 1 Steady State Amplitude Change 4.4413 mV
AP 1 Amplitude 81.1751 mV
AP 1 Width at Half Height 0.7500 ms
AP 1 Width (Peak To Trough) 3.2000 ms
AP 1 Rate of Change Peak to Trough -32.6976 mV/ms
AP 1 AHP Depth 23.4573 mV
AP2 Amplitude 78.1353 mV
AP2 Width at Half Height 0.7500 ms
AP 2 Width (Peak to Trough) 3.3100 ms
AP 2 Rate of Change Peak to Trough -31.0947 mV/ms
AP 2 AHP Depth 24.7882 mV
AP 1-2 Amplitude Change Percent -3.7447 %
AP 1-2 Half Width Change Percent -0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -4.9022 %
AP 1-2 AHP Depth Percent Change 5.6736 %
Input Resistance 183.5567 MΩ
AP 1 Delay Mean 22.5300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 76.2000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 57.1400 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -28.5714 %
Steady State Accommodation Mean -28.5714 %
Accommodation Rate to Steady State -0.0207 %/ms
Accommodation at Steady State Mean -36.1842 %
Accommodation Rate Mean at Steady State 1622.1092 ms
ISI CV 10.3696
ISI Median 71.2100 ms
ISI Burst Mean Change 12.9309 %
Spike Rate (Strong Stimulation) 73.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 6.6900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 19.5800 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 12.9350 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2033.2800 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5557.25 µm2
Number of Stems 4.0
Number of Bifurcations 17.0
Number of Branches 38.0
Overall Width 228.26 µm
Overall Height 228.568 µm
Overall Depth 74.32 µm
Average Diameter 0.482203 µm
Total Length 1633.6 µm
Total Surface 2877.19 µm2
Total Volume 1734.86 µm3
Max Euclidean Distance 216.737 µm
Max Path Distance 261.723 µm
Max Branch Order 6.0
Average Contraction 0.923597
Total Fragmentation 1302.0
Partition Asymmetry 0.363725
Average Rall's Ratio 2.28375
Average Bifurcation Angle Local 82.1157 °
Average Bifurcation Angle Remote 69.3276 °
Fractal Dimension 1.02612
Complexity Summary
State Equations 102
Optimal Time-Step 0.01125 ms
Relative Complexity 11.19 HH
Model Size
Sections 36
Compartments 86
State Equations 102
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.01125 ms
Optimal Time-Step Error 0.11 %
Optimal Time-Step Benchmark Run Time 11.19 HH
 
Maximum Stable Time-Step 0.125 ms
Maximum Stable Time-Step Error 2.48 %
Max. Stable Time-Step Benchmark Run Time 15.73 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15400 Hz
CVODE Steps Per AP 583
CVODE Benchmark Run Time 17.57 HH
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