Primary visual area layer 5 aspiny 313861608 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Pvalb-IRES-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001459
Cell_471085845.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001473
Kv2like.channel.nml
( view NeuroML )
NMLCH001486
NaV.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001520
Im_v2.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCH001536
Kd.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001459
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Rapidly Adapting (RA)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -88.31 mV
Rheobase Current Interval (0.15358, 0.15610] nA
Threshold Current Interval (0.58594, 0.64453] nA
Bias Current (to -80.00 mV) 0.0289 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop N/A mV
AP 1 Steady State Amplitude Change N/A mV
AP 1 Amplitude 53.1738 mV
AP 1 Width at Half Height 0.3300 ms
AP 1 Width (Peak To Trough) 33.9300 ms
AP 1 Rate of Change Peak to Trough -3.0364 mV/ms
AP 1 AHP Depth 49.8522 mV
AP2 Amplitude N/A mV
AP2 Width at Half Height N/A ms
AP 2 Width (Peak to Trough) N/A ms
AP 2 Rate of Change Peak to Trough N/A mV/ms
AP 2 AHP Depth N/A mV
AP 1-2 Amplitude Change Percent N/A %
AP 1-2 Half Width Change Percent N/A %
AP 1-2 Rate of Change Peak to Trough Percent Change N/A %
AP 1-2 AHP Depth Percent Change N/A %
Input Resistance 270.4394 MΩ
AP 1 Delay Mean 12.9400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean N/A ms
AP 2 Delay SD N/A ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean -100.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median N/A ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 0.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.1400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) N/A ms
AP 2 Delay SD (Strong Stimulation) N/A ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 5000.0000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6667.25 µm2
Number of Stems 8.0
Number of Bifurcations 26.0
Number of Branches 60.0
Overall Width 289.647 µm
Overall Height 383.292 µm
Overall Depth 74.98 µm
Average Diameter 0.554656 µm
Total Length 3925.52 µm
Total Surface 7262.79 µm2
Total Volume 2742.36 µm3
Max Euclidean Distance 325.021 µm
Max Path Distance 381.509 µm
Max Branch Order 4.0
Average Contraction 0.869656
Total Fragmentation 3084.0
Partition Asymmetry 0.532051
Average Rall's Ratio 1.716
Average Bifurcation Angle Local 71.9224 °
Average Bifurcation Angle Remote 52.2836 °
Fractal Dimension 1.04152
Complexity Summary
State Equations 220
Optimal Time-Step 0.02508 ms
Relative Complexity 14.18 HH
Model Size
Sections 60
Compartments 192
State Equations 220
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.02508 ms
Optimal Time-Step Error 2.44 %
Optimal Time-Step Benchmark Run Time 14.18 HH
 
Maximum Stable Time-Step 0.5 ms
Maximum Stable Time-Step Error 4.15 %
Max. Stable Time-Step Benchmark Run Time 11.11 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 3572 Hz
CVODE Steps Per AP 5430
CVODE Benchmark Run Time 135.25 HH
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