Primary visual area layer 5 spiny 314822529 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Rorb-IRES2-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001458
Cell_471087975.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001458
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Accommodating Wide AP Multi-Spikers (awMS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -90.46 mV
Rheobase Current Interval (0.15656, 0.16068] nA
Threshold Current Interval (0.99609, 1.05469] nA
Bias Current (to -80.00 mV) 0.0643 nA
Testing Temperature 34.0 °C
Stability Interval [-3.4375, 15.0] nA
AP 1-2 Amplitude Drop 7.1207 mV
AP 1 Steady State Amplitude Change 7.1207 mV
AP 1 Amplitude 68.2493 mV
AP 1 Width at Half Height 0.5800 ms
AP 1 Width (Peak To Trough) 37.3500 ms
AP 1 Rate of Change Peak to Trough -3.1943 mV/ms
AP 1 AHP Depth 51.0569 mV
AP2 Amplitude 61.1286 mV
AP2 Width at Half Height 0.6200 ms
AP 2 Width (Peak to Trough) 57.8600 ms
AP 2 Rate of Change Peak to Trough -1.9683 mV/ms
AP 2 AHP Depth 52.7571 mV
AP 1-2 Amplitude Change Percent -10.4334 %
AP 1-2 Half Width Change Percent 6.8966 %
AP 1-2 Rate of Change Peak to Trough Percent Change -38.3805 %
AP 1-2 AHP Depth Percent Change 3.3299 %
Input Resistance 155.5938 MΩ
AP 1 Delay Mean 32.0900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 1754.3000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median 1722.2100 ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 1.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 9.6800 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 1469.3700 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 2065.3400 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 16825.8 µm2
Number of Stems 7.0
Number of Bifurcations 54.0
Number of Branches 115.0
Overall Width 249.438 µm
Overall Height 838.602 µm
Overall Depth 60.75 µm
Average Diameter 0.463833 µm
Total Length 5206.66 µm
Total Surface 8413.79 µm2
Total Volume 5186.55 µm3
Max Euclidean Distance 717.826 µm
Max Path Distance 966.443 µm
Max Branch Order 11.0
Average Contraction 0.829775
Total Fragmentation 4242.0
Partition Asymmetry 0.497932
Average Rall's Ratio 2.01088
Average Bifurcation Angle Local 83.2571 °
Average Bifurcation Angle Remote 70.0803 °
Fractal Dimension 1.08184
Complexity Summary
State Equations 300
Optimal Time-Step 0.00774 ms
Relative Complexity 40.50 HH
Model Size
Sections 110
Compartments 284
State Equations 300
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00774 ms
Optimal Time-Step Error 0.01 %
Optimal Time-Step Benchmark Run Time 40.50 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.07 %
Max. Stable Time-Step Benchmark Run Time 78.33 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12225 Hz
CVODE Steps Per AP 13030
CVODE Benchmark Run Time 293.64 HH
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