Primary visual area layer 5 spiny 314831019 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Scnn1a-Tg3-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001453
Cell_473863578.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001453
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Rapidly Adapting (RA)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -87.95 mV
Rheobase Current Interval (0.11673, 0.12016] nA
Threshold Current Interval (0.82031, 0.87891] nA
Bias Current (to -80.00 mV) 0.0367 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop N/A mV
AP 1 Steady State Amplitude Change N/A mV
AP 1 Amplitude 76.9462 mV
AP 1 Width at Half Height 0.7600 ms
AP 1 Width (Peak To Trough) 38.8600 ms
AP 1 Rate of Change Peak to Trough -3.4030 mV/ms
AP 1 AHP Depth 55.2929 mV
AP2 Amplitude N/A mV
AP2 Width at Half Height N/A ms
AP 2 Width (Peak to Trough) N/A ms
AP 2 Rate of Change Peak to Trough N/A mV/ms
AP 2 AHP Depth N/A mV
AP 1-2 Amplitude Change Percent N/A %
AP 1-2 Half Width Change Percent N/A %
AP 1-2 Rate of Change Peak to Trough Percent Change N/A %
AP 1-2 AHP Depth Percent Change N/A %
Input Resistance 161.8697 MΩ
AP 1 Delay Mean 38.0700 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean N/A ms
AP 2 Delay SD N/A ms
Burst 1 ISI Mean N/A ms
Burst 1 ISI SD N/A ms
Initial Accommodation Mean -100.0000 %
Steady State Accommodation Mean -100.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean N/A %
Accommodation Rate Mean at Steady State N/A ms
ISI CV N/A
ISI Median N/A ms
ISI Burst Mean Change N/A %
Spike Rate (Strong Stimulation) 0.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 11.6900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) N/A ms
AP 2 Delay SD (Strong Stimulation) N/A ms
Burst 1 ISI Mean (Strong Stimulation) N/A ms
Burst 1 ISI SD (Strong Stimulation) N/A ms
Ramp First Spike Time 2125.4400 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 12576.5 µm2
Number of Stems 11.0
Number of Bifurcations 36.0
Number of Branches 83.0
Overall Width 580.467 µm
Overall Height 240.282 µm
Overall Depth 60.81 µm
Average Diameter 0.526076 µm
Total Length 4747.11 µm
Total Surface 8689.59 µm2
Total Volume 4334.91 µm3
Max Euclidean Distance 534.395 µm
Max Path Distance 658.425 µm
Max Branch Order 7.0
Average Contraction 0.75917
Total Fragmentation 4381.0
Partition Asymmetry 0.468056
Average Rall's Ratio 2.39909
Average Bifurcation Angle Local 71.5445 °
Average Bifurcation Angle Remote 71.1382 °
Fractal Dimension 1.09451
Complexity Summary
State Equations 251
Optimal Time-Step 0.00775 ms
Relative Complexity 36.04 HH
Model Size
Sections 83
Compartments 235
State Equations 251
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.02 %
Optimal Time-Step Benchmark Run Time 36.04 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.08 %
Max. Stable Time-Step Benchmark Run Time 69.85 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12223 Hz
CVODE Steps Per AP 14221
CVODE Benchmark Run Time 283.73 HH
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