Lateral visual area layer 4 spiny 478499902 Cell

Model Type:
Cell
Neurolex IDs: Lateral visual area layer 4
Keywords: Mus musculus, Rorb-IRES2-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001450
Cell_479427369.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001450
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -96.39 mV
Rheobase Current Interval (0.05493, 0.05859] nA
Threshold Current Interval (0.87891, 0.93750] nA
Bias Current (to -80.00 mV) 0.0317 nA
Testing Temperature 34.0 °C
Stability Interval [-2.5, 15.0] nA
AP 1-2 Amplitude Drop 1.6846 mV
AP 1 Steady State Amplitude Change 4.9436 mV
AP 1 Amplitude 62.0693 mV
AP 1 Width at Half Height 0.6800 ms
AP 1 Width (Peak To Trough) 3.2800 ms
AP 1 Rate of Change Peak to Trough -22.8267 mV/ms
AP 1 AHP Depth 12.8025 mV
AP2 Amplitude 60.3847 mV
AP2 Width at Half Height 0.6900 ms
AP 2 Width (Peak to Trough) 3.5800 ms
AP 2 Rate of Change Peak to Trough -20.4998 mV/ms
AP 2 AHP Depth 13.0045 mV
AP 1-2 Amplitude Change Percent -2.7141 %
AP 1-2 Half Width Change Percent 1.4706 %
AP 1-2 Rate of Change Peak to Trough Percent Change -10.1941 %
AP 1-2 AHP Depth Percent Change 1.5784 %
Input Resistance 522.7925 MΩ
AP 1 Delay Mean 99.0800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 112.1000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 15.5000 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -25.0000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0623 %/ms
Accommodation at Steady State Mean -94.8132 %
Accommodation Rate Mean at Steady State 116.2748 ms
ISI CV 1.2290
ISI Median 40.6650 ms
ISI Burst Mean Change 38.0952 %
Spike Rate (Strong Stimulation) 26.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 32.0400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 39.6100 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.0800 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2104.0200 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6403.51 µm2
Number of Stems 7.0
Number of Bifurcations 29.0
Number of Branches 65.0
Overall Width 198.772 µm
Overall Height 451.315 µm
Overall Depth 62.13 µm
Average Diameter 0.580643 µm
Total Length 3303.29 µm
Total Surface 6521.24 µm2
Total Volume 2708.06 µm3
Max Euclidean Distance 377.442 µm
Max Path Distance 431.207 µm
Max Branch Order 9.0
Average Contraction 0.911184
Total Fragmentation 2822.0
Partition Asymmetry 0.488916
Average Rall's Ratio 1.80531
Average Bifurcation Angle Local 81.1651 °
Average Bifurcation Angle Remote 71.9805 °
Fractal Dimension 1.025
Complexity Summary
State Equations 184
Optimal Time-Step 0.00781 ms
Relative Complexity 25.09 HH
Model Size
Sections 64
Compartments 168
State Equations 184
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00781 ms
Optimal Time-Step Error 0.71 %
Optimal Time-Step Benchmark Run Time 25.09 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.86 %
Max. Stable Time-Step Benchmark Run Time 48.97 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14509 Hz
CVODE Steps Per AP 461
CVODE Benchmark Run Time 24.63 HH
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