Primary visual area layer 4 spiny 370351753 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 4
Keywords: Mus musculus, Nr5a1-Cre
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001443
Cell_472442377.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001443
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -93.61 mV
Rheobase Current Interval (0.11856, 0.12177] nA
Threshold Current Interval (0.76172, 0.82031] nA
Bias Current (to -80.00 mV) 0.0450 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop 2.4588 mV
AP 1 Steady State Amplitude Change 6.3333 mV
AP 1 Amplitude 78.1682 mV
AP 1 Width at Half Height 0.5700 ms
AP 1 Width (Peak To Trough) 2.3600 ms
AP 1 Rate of Change Peak to Trough -39.4704 mV/ms
AP 1 AHP Depth 14.9820 mV
AP2 Amplitude 75.7094 mV
AP2 Width at Half Height 0.5700 ms
AP 2 Width (Peak to Trough) 2.4600 ms
AP 2 Rate of Change Peak to Trough -37.1610 mV/ms
AP 2 AHP Depth 15.7067 mV
AP 1-2 Amplitude Change Percent -3.1456 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -5.8510 %
AP 1-2 AHP Depth Percent Change 4.8375 %
Input Resistance 295.6124 MΩ
AP 1 Delay Mean 35.1800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 62.6900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 29.4600 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -44.4444 %
Steady State Accommodation Mean -44.4444 %
Accommodation Rate to Steady State -0.0767 %/ms
Accommodation at Steady State Mean -75.6582 %
Accommodation Rate Mean at Steady State 274.9498 ms
ISI CV 3.5159
ISI Median 80.6700 ms
ISI Burst Mean Change 14.1767 %
Spike Rate (Strong Stimulation) 25.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 10.5800 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 18.8000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 11.0200 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2077.2300 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5057.12 µm2
Number of Stems 5.0
Number of Bifurcations 28.0
Number of Branches 61.0
Overall Width 187.919 µm
Overall Height 288.109 µm
Overall Depth 57.76 µm
Average Diameter 0.496404 µm
Total Length 3113.91 µm
Total Surface 5258.02 µm2
Total Volume 1925.09 µm3
Max Euclidean Distance 379.717 µm
Max Path Distance 402.441 µm
Max Branch Order 6.0
Average Contraction 0.894184
Total Fragmentation 2951.0
Partition Asymmetry 0.401984
Average Rall's Ratio 2.87591
Average Bifurcation Angle Local 80.6255 °
Average Bifurcation Angle Remote 55.512 °
Fractal Dimension 1.0301
Complexity Summary
State Equations 183
Optimal Time-Step 0.00767 ms
Relative Complexity 26.65 HH
Model Size
Sections 61
Compartments 167
State Equations 183
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00767 ms
Optimal Time-Step Error 0.12 %
Optimal Time-Step Benchmark Run Time 26.65 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.35 %
Max. Stable Time-Step Benchmark Run Time 51.06 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 12012 Hz
CVODE Steps Per AP 827
CVODE Benchmark Run Time 27.25 HH
Website & Images Copyright NeuroML © 2019 For questions: Contact us Links: Search Test |  ModelDB WS