Primary visual area layer 5 spiny 471758398 Cell

Model Type:
Cell
Neurolex IDs: Primary visual area layer 5
Keywords: Mus musculus, Rbp4-Cre_KL100
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001441
Cell_478513445.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001441
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -79.18 mV
Rheobase Current Interval (0.27237, 0.27466] nA
Threshold Current Interval (0.52734, 0.58594] nA
Bias Current (to -70.00 mV) 0.2003 nA
Testing Temperature 34.0 °C
Stability Interval [-6.875, 15.0] nA
AP 1-2 Amplitude Drop 2.0331 mV
AP 1 Steady State Amplitude Change 16.2041 mV
AP 1 Amplitude 79.5004 mV
AP 1 Width at Half Height 0.5800 ms
AP 1 Width (Peak To Trough) 2.7000 ms
AP 1 Rate of Change Peak to Trough -34.8291 mV/ms
AP 1 AHP Depth 14.5380 mV
AP2 Amplitude 77.4673 mV
AP2 Width at Half Height 0.5900 ms
AP 2 Width (Peak to Trough) 2.8400 ms
AP 2 Rate of Change Peak to Trough -32.3427 mV/ms
AP 2 AHP Depth 14.3858 mV
AP 1-2 Amplitude Change Percent -2.5573 %
AP 1-2 Half Width Change Percent 1.7241 %
AP 1-2 Rate of Change Peak to Trough Percent Change -7.1389 %
AP 1-2 AHP Depth Percent Change -1.0471 %
Input Resistance 28.4352 MΩ
AP 1 Delay Mean 6.1200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 14.4800 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 8.3800 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -51.7241 %
Steady State Accommodation Mean -51.7241 %
Accommodation Rate to Steady State -0.1030 %/ms
Accommodation at Steady State Mean -80.1576 %
Accommodation Rate Mean at Steady State 315.7169 ms
ISI CV 3.1820
ISI Median 27.9200 ms
ISI Burst Mean Change 0.4785 %
Spike Rate (Strong Stimulation) 1.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 6.8200 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 11.7400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 4.1500 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2074.7700 ms
Frequency Filter Type High-Pass
Frequency Filter Pass Above 53.0000 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7609.2 µm2
Number of Stems 8.0
Number of Bifurcations 18.0
Number of Branches 44.0
Overall Width 500.148 µm
Overall Height 236.697 µm
Overall Depth 97.63 µm
Average Diameter 0.487374 µm
Total Length 2650.83 µm
Total Surface 4511.72 µm2
Total Volume 2461.24 µm3
Max Euclidean Distance 448.268 µm
Max Path Distance 491.699 µm
Max Branch Order 7.0
Average Contraction 0.903128
Total Fragmentation 2100.0
Partition Asymmetry 0.511464
Average Rall's Ratio 2.0225
Average Bifurcation Angle Local 68.7204 °
Average Bifurcation Angle Remote 69.313 °
Fractal Dimension 1.02802
Complexity Summary
State Equations 151
Optimal Time-Step 0.00771 ms
Relative Complexity 23.30 HH
Model Size
Sections 43
Compartments 135
State Equations 151
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00771 ms
Optimal Time-Step Error 0.76 %
Optimal Time-Step Benchmark Run Time 23.30 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 3.89 %
Max. Stable Time-Step Benchmark Run Time 44.90 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 11590 Hz
CVODE Steps Per AP 1217
CVODE Benchmark Run Time 28.06 HH
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