posteromedial visual area layer 4 spiny 485912047 Cell

Model Type:
Cell
Neurolex IDs: Posteromedial visual area layer 4
Keywords: Mus musculus, Cux2-CreERT2
Publication: Gouwens, et. al. (2018) Systematic generation of biophysically detailed models for diverse cortical neuron types.
Authors:
Nathan W Gouwens   Jim Berg   David Feng   Staci A Sorensen   Hongkui Zeng   Michael J Hawrylycz   Christof Koch   Anton Arkhipov  
Translators: Nicholas Cain   Padraig Gleeson   Shreejoy Tripathy  
Sources:
Files:
Model ID NeuroML File
NMLCL001439
Cell_486511108.cell.nml
( view NeuroML )
NMLCH001436
Ca_HVA.channel.nml
( view NeuroML )
NMLCH001446
Ih.channel.nml
( view NeuroML )
NMLCH001465
Kv3_1.channel.nml
( view NeuroML )
NMLCH001471
pas.channel.nml
( view NeuroML )
NMLCH001480
Nap.channel.nml
( view NeuroML )
NMLCH001487
SK.channel.nml
( view NeuroML )
NMLCH001490
NaTs.channel.nml
( view NeuroML )
NMLCH001511
Ca_LVA.channel.nml
( view NeuroML )
NMLCH001523
Im.channel.nml
( view NeuroML )
NMLCH001528
K_P.channel.nml
( view NeuroML )
NMLCH001529
K_T.channel.nml
( view NeuroML )
NMLCN001518
CaDynamics.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001439
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -87.07 mV
Rheobase Current Interval (0.07393, 0.07828] nA
Threshold Current Interval (1.05469, 1.11328] nA
Bias Current (to -80.00 mV) 0.0332 nA
Testing Temperature 34.0 °C
Stability Interval [-4.375, 15.0] nA
AP 1-2 Amplitude Drop -0.1201 mV
AP 1 Steady State Amplitude Change 1.9752 mV
AP 1 Amplitude 72.7965 mV
AP 1 Width at Half Height 0.9900 ms
AP 1 Width (Peak To Trough) 8.3700 ms
AP 1 Rate of Change Peak to Trough -10.9508 mV/ms
AP 1 AHP Depth 18.8617 mV
AP2 Amplitude 72.9166 mV
AP2 Width at Half Height 0.9800 ms
AP 2 Width (Peak to Trough) 8.1000 ms
AP 2 Rate of Change Peak to Trough -11.4977 mV/ms
AP 2 AHP Depth 20.2147 mV
AP 1-2 Amplitude Change Percent 0.1650 %
AP 1-2 Half Width Change Percent -1.0101 %
AP 1-2 Rate of Change Peak to Trough Percent Change 4.9941 %
AP 1-2 AHP Depth Percent Change 7.1734 %
Input Resistance 196.0001 MΩ
AP 1 Delay Mean 58.4400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 94.1200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 37.3850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.0650 %/ms
Accommodation at Steady State Mean -77.6834 %
Accommodation Rate Mean at Steady State 443.7124 ms
ISI CV 2.8657
ISI Median 103.5000 ms
ISI Burst Mean Change 9.5572 %
Spike Rate (Strong Stimulation) 23.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 19.9100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 36.0400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 17.7000 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2085.2000 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 105.4361 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 2787.54 µm2
Number of Stems 9.0
Number of Bifurcations 28.0
Number of Branches 65.0
Overall Width 212.322 µm
Overall Height 519.549 µm
Overall Depth 55.7 µm
Average Diameter 0.540315 µm
Total Length 3453.96 µm
Total Surface 6159.58 µm2
Total Volume 1670.63 µm3
Max Euclidean Distance 435.406 µm
Max Path Distance 494.05 µm
Max Branch Order 6.0
Average Contraction 0.918519
Total Fragmentation 2950.0
Partition Asymmetry 0.294643
Average Rall's Ratio 1.98429
Average Bifurcation Angle Local 65.8298 °
Average Bifurcation Angle Remote 59.4255 °
Fractal Dimension 1.02399
Complexity Summary
State Equations 185
Optimal Time-Step 0.00760 ms
Relative Complexity 29.15 HH
Model Size
Sections 65
Compartments 169
State Equations 185
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00760 ms
Optimal Time-Step Error 0.04 %
Optimal Time-Step Benchmark Run Time 29.15 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 2.03 %
Max. Stable Time-Step Benchmark Run Time 55.36 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13349 Hz
CVODE Steps Per AP 2216
CVODE Benchmark Run Time 51.71 HH
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