Layer 5 Delayed Stuttering Nest Basket Cell (5)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 5
Keywords: delayed stuttering,Layer 5,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, nest, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001111
dSTUT214_L5_NBC_d4cc42ae25_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001111
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.11 mV
Rheobase Current Interval (0.10712, 0.10803] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -70.00 mV) 0.0210 nA
Testing Temperature 34.0 °C
Stability Interval [-0.625, 15.0] nA
AP 1-2 Amplitude Drop 5.0253 mV
AP 1 Steady State Amplitude Change 5.3738 mV
AP 1 Amplitude 82.4427 mV
AP 1 Width at Half Height 0.5400 ms
AP 1 Width (Peak To Trough) 2.3800 ms
AP 1 Rate of Change Peak to Trough -43.6121 mV/ms
AP 1 AHP Depth 21.3541 mV
AP2 Amplitude 77.4174 mV
AP2 Width at Half Height 0.5400 ms
AP 2 Width (Peak to Trough) 2.3900 ms
AP 2 Rate of Change Peak to Trough -41.4745 mV/ms
AP 2 AHP Depth 21.7066 mV
AP 1-2 Amplitude Change Percent -6.0955 %
AP 1-2 Half Width Change Percent -0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -4.9015 %
AP 1-2 AHP Depth Percent Change 1.6504 %
Input Resistance 375.3645 MΩ
AP 1 Delay Mean 4.5600 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 24.0700 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 20.4800 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -10.5263 %
Steady State Accommodation Mean -10.5263 %
Accommodation Rate to Steady State -0.0125 %/ms
Accommodation at Steady State Mean -18.7975 %
Accommodation Rate Mean at Steady State 2222.7085 ms
ISI CV 26.2627
ISI Median 22.5000 ms
ISI Burst Mean Change 9.9436 %
Spike Rate (Strong Stimulation) 79.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 1.9400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 12.1300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 11.2100 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2143.9100 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 51.9968 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 7979.45 µm2
Number of Stems 7.0
Number of Bifurcations 28.0
Number of Branches 62.0
Overall Width 283.311 µm
Overall Height 358.149 µm
Overall Depth 183.66 µm
Average Diameter 0.620172 µm
Total Length 4096.63 µm
Total Surface 4328.92 µm2
Total Volume 2710.78 µm3
Max Euclidean Distance 248.276 µm
Max Path Distance 286.005 µm
Max Branch Order 5.0
Average Contraction 0.954075
Total Fragmentation 1660.0
Partition Asymmetry 0.289683
Average Rall's Ratio 0.67725
Average Bifurcation Angle Local 13.9834 °
Average Bifurcation Angle Remote 43.5207 °
Fractal Dimension 1.01043
Complexity Summary
State Equations 2758
Optimal Time-Step 0.00546 ms
Relative Complexity 873.92 HH
Model Size
Sections 63
Compartments 211
State Equations 2758
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00546 ms
Optimal Time-Step Error 0.24 %
Optimal Time-Step Benchmark Run Time 873.92 HH
 
Maximum Stable Time-Step 0.03125 ms
Maximum Stable Time-Step Error 1.24 %
Max. Stable Time-Step Benchmark Run Time 2385.33 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 18471 Hz
CVODE Steps Per AP 309
CVODE Benchmark Run Time 676.47 HH
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