Layer 5 Delayed Stuttering Bipolar Cell (3)

Model Type:
Cell
Neurolex IDs: Bipolar Cell
Neocortex Layer 5
Keywords: delayed stuttering,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, bipolar
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001099
dSTUT214_L5_BP_55f9b731a1_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001099
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.99 mV
Rheobase Current Interval (0.10529, 0.10620] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -70.00 mV) 0.0238 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop 4.0386 mV
AP 1 Steady State Amplitude Change 3.8520 mV
AP 1 Amplitude 76.5546 mV
AP 1 Width at Half Height 0.6200 ms
AP 1 Width (Peak To Trough) 2.5200 ms
AP 1 Rate of Change Peak to Trough -35.1997 mV/ms
AP 1 AHP Depth 12.1485 mV
AP2 Amplitude 72.5160 mV
AP2 Width at Half Height 0.6100 ms
AP 2 Width (Peak to Trough) 2.6300 ms
AP 2 Rate of Change Peak to Trough -32.4358 mV/ms
AP 2 AHP Depth 12.7901 mV
AP 1-2 Amplitude Change Percent -5.2755 %
AP 1-2 Half Width Change Percent -1.6129 %
AP 1-2 Rate of Change Peak to Trough Percent Change -7.8520 %
AP 1-2 AHP Depth Percent Change 5.2812 %
Input Resistance 311.9758 MΩ
AP 1 Delay Mean 6.0300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 21.9100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 17.1400 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 4.3478 %
Steady State Accommodation Mean 4.3478 %
Accommodation Rate to Steady State 0.1984 %/ms
Accommodation at Steady State Mean -0.0000 %
Accommodation Rate Mean at Steady State 70.3575 ms
ISI CV 34.4781
ISI Median 16.7800 ms
ISI Burst Mean Change 15.8690 %
Spike Rate (Strong Stimulation) 111.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 1.9000 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 9.8800 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.6250 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2066.9000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 1850.73 µm2
Number of Stems 5.0
Number of Bifurcations 30.0
Number of Branches 64.0
Overall Width 246.072 µm
Overall Height 356.882 µm
Overall Depth 263.62 µm
Average Diameter 0.633331 µm
Total Length 3457.31 µm
Total Surface 5961.68 µm2
Total Volume 1263.3 µm3
Max Euclidean Distance 291.045 µm
Max Path Distance 328.196 µm
Max Branch Order 6.0
Average Contraction 0.971393
Total Fragmentation 1022.0
Partition Asymmetry 0.369444
Average Rall's Ratio 1.11375
Average Bifurcation Angle Local 31.9107 °
Average Bifurcation Angle Remote 48.1252 °
Fractal Dimension 1.00559
Complexity Summary
State Equations 2316
Optimal Time-Step 0.00768 ms
Relative Complexity 553.26 HH
Model Size
Sections 65
Compartments 177
State Equations 2316
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00768 ms
Optimal Time-Step Error 0.33 %
Optimal Time-Step Benchmark Run Time 553.26 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 2.00 %
Max. Stable Time-Step Benchmark Run Time 1061.91 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 17299 Hz
CVODE Steps Per AP 261
CVODE Benchmark Run Time 556.22 HH
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