Layer 4 Delayed Stuttering Large Basket Cell (4)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 4
Keywords: delayed stuttering,Layer 4,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, large, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001095
dSTUT214_L4_LBC_84318d400f_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001095
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.52 mV
Rheobase Current Interval (0.32959, 0.33234] nA
Threshold Current Interval (0.64453, 0.70312] nA
Bias Current (to -70.00 mV) 0.0559 nA
Testing Temperature 34.0 °C
Stability Interval [-3.125, 15.0] nA
AP 1-2 Amplitude Drop 7.0341 mV
AP 1 Steady State Amplitude Change 6.8925 mV
AP 1 Amplitude 78.3459 mV
AP 1 Width at Half Height 0.5800 ms
AP 1 Width (Peak To Trough) 2.7900 ms
AP 1 Rate of Change Peak to Trough -34.7048 mV/ms
AP 1 AHP Depth 18.4804 mV
AP2 Amplitude 71.3118 mV
AP2 Width at Half Height 0.5900 ms
AP 2 Width (Peak to Trough) 2.9200 ms
AP 2 Rate of Change Peak to Trough -30.8890 mV/ms
AP 2 AHP Depth 18.8841 mV
AP 1-2 Amplitude Change Percent -8.9782 %
AP 1-2 Half Width Change Percent 1.7241 %
AP 1-2 Rate of Change Peak to Trough Percent Change -10.9949 %
AP 1-2 AHP Depth Percent Change 2.1845 %
Input Resistance 121.4574 MΩ
AP 1 Delay Mean 5.0000 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 22.4600 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 18.5050 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 4.7619 %
Steady State Accommodation Mean 4.7619 %
Accommodation Rate to Steady State 0.2120 %/ms
Accommodation at Steady State Mean -4.0537 %
Accommodation Rate Mean at Steady State 0.7225 ms
ISI CV 48.8300
ISI Median 18.0200 ms
ISI Burst Mean Change 11.9702 %
Spike Rate (Strong Stimulation) 97.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 1.7700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 10.7000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 9.7500 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2104.8500 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 116.9435 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 15727.9 µm2
Number of Stems 9.0
Number of Bifurcations 31.0
Number of Branches 70.0
Overall Width 386.782 µm
Overall Height 513.262 µm
Overall Depth 240.93 µm
Average Diameter 0.96297 µm
Total Length 4728.88 µm
Total Surface 12353.3 µm2
Total Volume 7152.01 µm3
Max Euclidean Distance 414.189 µm
Max Path Distance 445.105 µm
Max Branch Order 6.0
Average Contraction 0.959916
Total Fragmentation 1350.0
Partition Asymmetry 0.459601
Average Rall's Ratio 1.0012
Average Bifurcation Angle Local 43.5303 °
Average Bifurcation Angle Remote 54.6984 °
Fractal Dimension 1.00662
Complexity Summary
State Equations 3213
Optimal Time-Step 0.00775 ms
Relative Complexity 739.65 HH
Model Size
Sections 70
Compartments 246
State Equations 3213
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.46 %
Optimal Time-Step Benchmark Run Time 739.65 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 2.56 %
Max. Stable Time-Step Benchmark Run Time 1433.53 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 17203 Hz
CVODE Steps Per AP 221
CVODE Benchmark Run Time 732.14 HH
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