Layer 6 Delayed Non-accommodating Small Basket Cell (4)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 6
Keywords: delayed non-accommodating,Layer 6,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, small, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001080
dNAC222_L6_SBC_f2d2498fe5_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001080
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.37 mV
Rheobase Current Interval (0.06226, 0.06317] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0261 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 1.6194 mV
AP 1 Steady State Amplitude Change 0.9284 mV
AP 1 Amplitude 70.5664 mV
AP 1 Width at Half Height 0.6500 ms
AP 1 Width (Peak To Trough) 3.0100 ms
AP 1 Rate of Change Peak to Trough -27.7973 mV/ms
AP 1 AHP Depth 13.1034 mV
AP2 Amplitude 68.9470 mV
AP2 Width at Half Height 0.6400 ms
AP 2 Width (Peak to Trough) 3.1600 ms
AP 2 Rate of Change Peak to Trough -26.2453 mV/ms
AP 2 AHP Depth 13.9880 mV
AP 1-2 Amplitude Change Percent -2.2949 %
AP 1-2 Half Width Change Percent -1.5385 %
AP 1-2 Rate of Change Peak to Trough Percent Change -5.5834 %
AP 1-2 AHP Depth Percent Change 6.7508 %
Input Resistance 322.8111 MΩ
AP 1 Delay Mean 13.1600 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 41.5400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 29.1850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 7.1429 %
Accommodation Rate to Steady State 0.1720 %/ms
Accommodation at Steady State Mean -0.0000 %
Accommodation Rate Mean at Steady State 141.5260 ms
ISI CV 36.3478
ISI Median 27.6500 ms
ISI Burst Mean Change 5.6730 %
Spike Rate (Strong Stimulation) 69.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.1600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 16.7600 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 13.9350 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2074.3500 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3701.37 µm2
Number of Stems 4.0
Number of Bifurcations 28.0
Number of Branches 59.0
Overall Width 166.466 µm
Overall Height 722.152 µm
Overall Depth 235.15 µm
Average Diameter 0.798261 µm
Total Length 3187.44 µm
Total Surface 8141.57 µm2
Total Volume 3059.6 µm3
Max Euclidean Distance 717.681 µm
Max Path Distance 763.166 µm
Max Branch Order 8.0
Average Contraction 0.929572
Total Fragmentation 2968.0
Partition Asymmetry 0.581143
Average Rall's Ratio 0.850625
Average Bifurcation Angle Local 25.9898 °
Average Bifurcation Angle Remote 65.3218 °
Fractal Dimension 1.01409
Complexity Summary
State Equations 2009
Optimal Time-Step 0.00539 ms
Relative Complexity 610.43 HH
Model Size
Sections 60
Compartments 166
State Equations 2009
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00539 ms
Optimal Time-Step Error 0.26 %
Optimal Time-Step Benchmark Run Time 610.43 HH
 
Maximum Stable Time-Step 0.03125 ms
Maximum Stable Time-Step Error 1.21 %
Max. Stable Time-Step Benchmark Run Time 1643.34 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 16472 Hz
CVODE Steps Per AP 329
CVODE Benchmark Run Time 427.23 HH
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