Layer 5 Delayed Non-accommodating Chandelier Cell (3)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 5
Chandelier Cell
Keywords: delayed non-accommodating,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, chandelier
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001054
dNAC222_L5_ChC_2f130a9db3_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001054
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.85 mV
Rheobase Current Interval (0.07278, 0.07416] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -80.00 mV) -0.0250 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop 1.2893 mV
AP 1 Steady State Amplitude Change 0.7458 mV
AP 1 Amplitude 66.2698 mV
AP 1 Width at Half Height 0.7300 ms
AP 1 Width (Peak To Trough) 4.2200 ms
AP 1 Rate of Change Peak to Trough -19.5613 mV/ms
AP 1 AHP Depth 16.2788 mV
AP2 Amplitude 64.9805 mV
AP2 Width at Half Height 0.7400 ms
AP 2 Width (Peak to Trough) 4.4000 ms
AP 2 Rate of Change Peak to Trough -18.5879 mV/ms
AP 2 AHP Depth 16.8060 mV
AP 1-2 Amplitude Change Percent -1.9455 %
AP 1-2 Half Width Change Percent 1.3699 %
AP 1-2 Rate of Change Peak to Trough Percent Change -4.9763 %
AP 1-2 AHP Depth Percent Change 3.2386 %
Input Resistance 315.1078 MΩ
AP 1 Delay Mean 16.6200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 51.1800 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 34.9700 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State 0.0000 %/ms
Accommodation at Steady State Mean -0.0000 %
Accommodation Rate Mean at Steady State 147.9880 ms
ISI CV 40.2640
ISI Median 32.8300 ms
ISI Burst Mean Change 2.3727 %
Spike Rate (Strong Stimulation) 59.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 5.4300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 20.8200 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 16.4550 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2094.9100 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 107.4093 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5852.68 µm2
Number of Stems 9.0
Number of Bifurcations 42.0
Number of Branches 92.0
Overall Width 245.913 µm
Overall Height 341.456 µm
Overall Depth 260.2 µm
Average Diameter 0.816843 µm
Total Length 3803.6 µm
Total Surface 8501.65 µm2
Total Volume 3443.44 µm3
Max Euclidean Distance 221.631 µm
Max Path Distance 272.121 µm
Max Branch Order 6.0
Average Contraction 0.951886
Total Fragmentation 2523.0
Partition Asymmetry 0.492435
Average Rall's Ratio 0.857407
Average Bifurcation Angle Local 36.5594 °
Average Bifurcation Angle Remote 58.3397 °
Fractal Dimension 1.0108
Complexity Summary
State Equations 2441
Optimal Time-Step 0.00768 ms
Relative Complexity 538.80 HH
Model Size
Sections 92
Compartments 202
State Equations 2441
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00768 ms
Optimal Time-Step Error 0.43 %
Optimal Time-Step Benchmark Run Time 538.80 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.87 %
Max. Stable Time-Step Benchmark Run Time 1034.38 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15463 Hz
CVODE Steps Per AP 306
CVODE Benchmark Run Time 504.06 HH
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