Layer 4 Delayed Non-accommodating Small Basket Cell (4)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 4
Keywords: delayed non-accommodating,Layer 4,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, small, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001050
dNAC222_L4_SBC_dcee829578_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001050
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -70.45 mV
Rheobase Current Interval (0.02426, 0.02472] nA
Threshold Current Interval (0.05859, 0.11719] nA
Bias Current (to -80.00 mV) -0.0142 nA
Testing Temperature 34.0 °C
Stability Interval [-0.625, 15.0] nA
AP 1-2 Amplitude Drop 2.2877 mV
AP 1 Steady State Amplitude Change 2.8711 mV
AP 1 Amplitude 84.5661 mV
AP 1 Width at Half Height 0.4600 ms
AP 1 Width (Peak To Trough) 2.3000 ms
AP 1 Rate of Change Peak to Trough -49.5942 mV/ms
AP 1 AHP Depth 29.5005 mV
AP2 Amplitude 82.2783 mV
AP2 Width at Half Height 0.4500 ms
AP 2 Width (Peak to Trough) 2.2500 ms
AP 2 Rate of Change Peak to Trough -49.8209 mV/ms
AP 2 AHP Depth 29.8186 mV
AP 1-2 Amplitude Change Percent -2.7053 %
AP 1-2 Half Width Change Percent -2.1739 %
AP 1-2 Rate of Change Peak to Trough Percent Change 0.4572 %
AP 1-2 AHP Depth Percent Change 1.0785 %
Input Resistance 674.7542 MΩ
AP 1 Delay Mean 9.1400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 43.6800 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 34.9150 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -18.1818 %
Steady State Accommodation Mean -27.2727 %
Accommodation Rate to Steady State -0.0274 %/ms
Accommodation at Steady State Mean -36.6496 %
Accommodation Rate Mean at Steady State 739.4409 ms
ISI CV 8.4845
ISI Median 47.3300 ms
ISI Burst Mean Change 2.1714 %
Spike Rate (Strong Stimulation) 40.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.6100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 22.7000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 19.6900 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2111.9400 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 51.9968 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6093.01 µm2
Number of Stems 7.0
Number of Bifurcations 6.0
Number of Branches 18.0
Overall Width 105.059 µm
Overall Height 97.8683 µm
Overall Depth 59.65 µm
Average Diameter 1.74557 µm
Total Length 622.774 µm
Total Surface 1819.21 µm2
Total Volume 1772.87 µm3
Max Euclidean Distance 89.5396 µm
Max Path Distance 99.9121 µm
Max Branch Order 2.0
Average Contraction 0.981248
Total Fragmentation 163.0
Partition Asymmetry 0.5
Average Rall's Ratio 1.42375
Average Bifurcation Angle Local 54.9503 °
Average Bifurcation Angle Remote 68.8165 °
Fractal Dimension 1.0024
Complexity Summary
State Equations 401
Optimal Time-Step 0.00781 ms
Relative Complexity 84.23 HH
Model Size
Sections 20
Compartments 32
State Equations 401
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00781 ms
Optimal Time-Step Error 0.23 %
Optimal Time-Step Benchmark Run Time 84.23 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.29 %
Max. Stable Time-Step Benchmark Run Time 164.46 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14860 Hz
CVODE Steps Per AP 319
CVODE Benchmark Run Time 78.09 HH
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