Layer 4 Delayed Non-accommodating Small Basket Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 4
Keywords: delayed non-accommodating,Layer 4,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, small, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL001047
dNAC222_L4_SBC_1bad5bb92b_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL001047
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.51 mV
Rheobase Current Interval (0.04257, 0.04326] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0152 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop 2.1545 mV
AP 1 Steady State Amplitude Change 2.3277 mV
AP 1 Amplitude 80.9259 mV
AP 1 Width at Half Height 0.5100 ms
AP 1 Width (Peak To Trough) 2.5600 ms
AP 1 Rate of Change Peak to Trough -40.3553 mV/ms
AP 1 AHP Depth 22.3837 mV
AP2 Amplitude 78.7714 mV
AP2 Width at Half Height 0.5000 ms
AP 2 Width (Peak to Trough) 2.4700 ms
AP 2 Rate of Change Peak to Trough -41.5285 mV/ms
AP 2 AHP Depth 23.8040 mV
AP 1-2 Amplitude Change Percent -2.6623 %
AP 1-2 Half Width Change Percent -1.9608 %
AP 1-2 Rate of Change Peak to Trough Percent Change 2.9071 %
AP 1-2 AHP Depth Percent Change 6.3450 %
Input Resistance 565.6852 MΩ
AP 1 Delay Mean 10.6800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 41.2200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 30.9850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -7.6923 %
Steady State Accommodation Mean -7.6923 %
Accommodation Rate to Steady State -0.0113 %/ms
Accommodation at Steady State Mean -13.1115 %
Accommodation Rate Mean at Steady State 1299.4956 ms
ISI CV 31.1448
ISI Median 33.4150 ms
ISI Burst Mean Change 2.9142 %
Spike Rate (Strong Stimulation) 54.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.5500 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 19.3600 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 16.7400 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2075.0500 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 105.6383 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5550.0 µm2
Number of Stems 8.0
Number of Bifurcations 17.0
Number of Branches 41.0
Overall Width 277.135 µm
Overall Height 336.747 µm
Overall Depth 116.3 µm
Average Diameter 0.489499 µm
Total Length 2958.0 µm
Total Surface 4028.24 µm2
Total Volume 2026.09 µm3
Max Euclidean Distance 225.882 µm
Max Path Distance 259.348 µm
Max Branch Order 4.0
Average Contraction 0.935304
Total Fragmentation 2328.0
Partition Asymmetry 0.45098
Average Rall's Ratio 0.615
Average Bifurcation Angle Local 23.5471 °
Average Bifurcation Angle Remote 65.0436 °
Fractal Dimension 1.01336
Complexity Summary
State Equations 1721
Optimal Time-Step 0.00779 ms
Relative Complexity 361.64 HH
Model Size
Sections 42
Compartments 142
State Equations 1721
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00779 ms
Optimal Time-Step Error 0.20 %
Optimal Time-Step Benchmark Run Time 361.64 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.75 %
Max. Stable Time-Step Benchmark Run Time 703.88 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15846 Hz
CVODE Steps Per AP 419
CVODE Benchmark Run Time 371.04 HH
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