Layer 2/3 Delayed Non-accommodating Chandelier Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Chandelier Cell
Keywords: delayed non-accommodating,Layer 2, Layer 3, Layer 2/3,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, chandelier
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000997
dNAC222_L23_ChC_2a16475c82_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000106
KdShu2007.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000997
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.86 mV
Rheobase Current Interval (0.05768, 0.05859] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0200 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 0.9506 mV
AP 1 Steady State Amplitude Change 0.6234 mV
AP 1 Amplitude 74.9658 mV
AP 1 Width at Half Height 0.6000 ms
AP 1 Width (Peak To Trough) 2.7200 ms
AP 1 Rate of Change Peak to Trough -33.2148 mV/ms
AP 1 AHP Depth 15.3783 mV
AP2 Amplitude 74.0152 mV
AP2 Width at Half Height 0.6000 ms
AP 2 Width (Peak to Trough) 2.8200 ms
AP 2 Rate of Change Peak to Trough -31.8324 mV/ms
AP 2 AHP Depth 15.7521 mV
AP 1-2 Amplitude Change Percent -1.2680 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -4.1619 %
AP 1-2 AHP Depth Percent Change 2.4306 %
Input Resistance 389.4641 MΩ
AP 1 Delay Mean 15.0500 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 46.8000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 32.3150 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 16.6667 %
Steady State Accommodation Mean 8.3333 %
Accommodation Rate to Steady State 0.1781 %/ms
Accommodation at Steady State Mean -0.0000 %
Accommodation Rate Mean at Steady State 161.8140 ms
ISI CV 37.2771
ISI Median 30.3650 ms
ISI Burst Mean Change 3.5591 %
Spike Rate (Strong Stimulation) 64.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 4.5700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 18.4500 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 15.1400 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2091.7700 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 122.0375 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3444.6 µm2
Number of Stems 4.0
Number of Bifurcations 31.0
Number of Branches 65.0
Overall Width 270.128 µm
Overall Height 461.592 µm
Overall Depth 178.76 µm
Average Diameter 0.658652 µm
Total Length 3662.13 µm
Total Surface 6936.52 µm2
Total Volume 1949.15 µm3
Max Euclidean Distance 278.841 µm
Max Path Distance 324.425 µm
Max Branch Order 8.0
Average Contraction 0.978543
Total Fragmentation 1133.0
Partition Asymmetry 0.4087
Average Rall's Ratio 1.08955
Average Bifurcation Angle Local 29.8641 °
Average Bifurcation Angle Remote 43.4333 °
Fractal Dimension 1.00409
Complexity Summary
State Equations 2297
Optimal Time-Step 0.00772 ms
Relative Complexity 492.70 HH
Model Size
Sections 66
Compartments 190
State Equations 2297
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00772 ms
Optimal Time-Step Error 0.21 %
Optimal Time-Step Benchmark Run Time 492.70 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.62 %
Max. Stable Time-Step Benchmark Run Time 950.32 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15002 Hz
CVODE Steps Per AP 323
CVODE Benchmark Run Time 455.82 HH
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