Layer 5 Continuous Stuttering Neurogliaform Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 5
Keywords: continuous stuttering,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, neurogliaform
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000977
cSTUT189_L5_NGC_95430123f5_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000977
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -76.08 mV
Rheobase Current Interval (0.11398, 0.11536] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -70.00 mV) 0.0243 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 5.3607 mV
AP 1 Steady State Amplitude Change 11.2685 mV
AP 1 Amplitude 68.3762 mV
AP 1 Width at Half Height 0.7800 ms
AP 1 Width (Peak To Trough) 4.3200 ms
AP 1 Rate of Change Peak to Trough -19.7781 mV/ms
AP 1 AHP Depth 17.0650 mV
AP2 Amplitude 63.0156 mV
AP2 Width at Half Height 0.8000 ms
AP 2 Width (Peak to Trough) 4.5600 ms
AP 2 Rate of Change Peak to Trough -17.8890 mV/ms
AP 2 AHP Depth 18.5581 mV
AP 1-2 Amplitude Change Percent -7.8400 %
AP 1-2 Half Width Change Percent 2.5641 %
AP 1-2 Rate of Change Peak to Trough Percent Change -9.5515 %
AP 1-2 AHP Depth Percent Change 8.7497 %
Input Resistance 347.4935 MΩ
AP 1 Delay Mean 6.3200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 24.0400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 18.5950 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -9.5238 %
Steady State Accommodation Mean -9.5238 %
Accommodation Rate to Steady State -0.0109 %/ms
Accommodation at Steady State Mean -18.4348 %
Accommodation Rate Mean at Steady State 2102.5172 ms
ISI CV 10.0072
ISI Median 19.2200 ms
ISI Burst Mean Change 9.8758 %
Spike Rate (Strong Stimulation) 87.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 2.8700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 12.9200 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 10.8550 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2105.2700 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 38.9517 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3387.44 µm2
Number of Stems 6.0
Number of Bifurcations 58.0
Number of Branches 121.0
Overall Width 113.842 µm
Overall Height 153.215 µm
Overall Depth 108.12 µm
Average Diameter 0.716829 µm
Total Length 2431.49 µm
Total Surface 5208.01 µm2
Total Volume 1724.16 µm3
Max Euclidean Distance 122.261 µm
Max Path Distance 156.208 µm
Max Branch Order 8.0
Average Contraction 0.962357
Total Fragmentation 1635.0
Partition Asymmetry 0.445327
Average Rall's Ratio 1.97923
Average Bifurcation Angle Local 27.646 °
Average Bifurcation Angle Remote 46.2055 °
Fractal Dimension 1.00989
Complexity Summary
State Equations 1592
Optimal Time-Step 0.00542 ms
Relative Complexity 573.30 HH
Model Size
Sections 121
Compartments 143
State Equations 1592
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00542 ms
Optimal Time-Step Error 0.43 %
Optimal Time-Step Benchmark Run Time 573.30 HH
 
Maximum Stable Time-Step 0.03125 ms
Maximum Stable Time-Step Error 1.71 %
Max. Stable Time-Step Benchmark Run Time 1552.93 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 32039 Hz
CVODE Steps Per AP 95
CVODE Benchmark Run Time 673.78 HH
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