Layer 5 Continuous Stuttering Martinotti Cell (5)

Model Type:
Cell
Neurolex IDs: Martinotti Cell
Neocortex Layer 5
Keywords: continuous stuttering,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000971
cSTUT189_L5_MC_cc2a170ef6_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000971
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Fast Spikers (FS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.27 mV
Rheobase Current Interval (0.14969, 0.15106] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -70.00 mV) 0.0333 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop 5.0631 mV
AP 1 Steady State Amplitude Change 5.2574 mV
AP 1 Amplitude 74.1598 mV
AP 1 Width at Half Height 0.6500 ms
AP 1 Width (Peak To Trough) 3.4000 ms
AP 1 Rate of Change Peak to Trough -26.5579 mV/ms
AP 1 AHP Depth 16.1371 mV
AP2 Amplitude 69.0967 mV
AP2 Width at Half Height 0.6500 ms
AP 2 Width (Peak to Trough) 3.6600 ms
AP 2 Rate of Change Peak to Trough -23.4406 mV/ms
AP 2 AHP Depth 16.6959 mV
AP 1-2 Amplitude Change Percent -6.8272 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -11.7377 %
AP 1-2 AHP Depth Percent Change 3.4629 %
Input Resistance 213.3892 MΩ
AP 1 Delay Mean 6.2200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 25.7100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 20.4000 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean -5.2632 %
Accommodation Rate to Steady State -0.1119 %/ms
Accommodation at Steady State Mean -8.1837 %
Accommodation Rate Mean at Steady State 0.9280 ms
ISI CV 73.3880
ISI Median 21.2100 ms
ISI Burst Mean Change 9.3381 %
Spike Rate (Strong Stimulation) 85.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 2.4600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 12.5400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 11.0750 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2105.2400 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 79.1878 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6580.39 µm2
Number of Stems 5.0
Number of Bifurcations 26.0
Number of Branches 56.0
Overall Width 241.032 µm
Overall Height 725.244 µm
Overall Depth 93.27 µm
Average Diameter 0.827814 µm
Total Length 3212.16 µm
Total Surface 8351.04 µm2
Total Volume 3617.43 µm3
Max Euclidean Distance 581.113 µm
Max Path Distance 645.72 µm
Max Branch Order 7.0
Average Contraction 0.941552
Total Fragmentation 1552.0
Partition Asymmetry 0.518648
Average Rall's Ratio 1.45654
Average Bifurcation Angle Local 40.4113 °
Average Bifurcation Angle Remote 52.157 °
Fractal Dimension 1.00997
Complexity Summary
State Equations 1856
Optimal Time-Step 0.00779 ms
Relative Complexity 485.88 HH
Model Size
Sections 57
Compartments 167
State Equations 1856
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00779 ms
Optimal Time-Step Error 0.31 %
Optimal Time-Step Benchmark Run Time 485.88 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.81 %
Max. Stable Time-Step Benchmark Run Time 946.01 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 18214 Hz
CVODE Steps Per AP 242
CVODE Benchmark Run Time 513.47 HH
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