Layer 6 Continuous Non-accommodating Double Bouquet Cell (2)

Model Type:
Cell
Neurolex IDs: Double Bouquet Cell
Neocortex Layer 6
Keywords: continuous non-accommodating,Layer 6,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, double bouquet
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000913
cNAC187_L6_DBC_2bb1f65738_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000913
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -67.67 mV
Rheobase Current Interval (0.03296, 0.03479] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -80.00 mV) -0.0569 nA
Testing Temperature 34.0 °C
Stability Interval [-4.375, 15.0] nA
AP 1-2 Amplitude Drop 0.2378 mV
AP 1 Steady State Amplitude Change 0.1590 mV
AP 1 Amplitude 61.0021 mV
AP 1 Width at Half Height 0.8300 ms
AP 1 Width (Peak To Trough) 7.7300 ms
AP 1 Rate of Change Peak to Trough -9.6328 mV/ms
AP 1 AHP Depth 13.4591 mV
AP2 Amplitude 60.7643 mV
AP2 Width at Half Height 0.8300 ms
AP 2 Width (Peak to Trough) 7.6500 ms
AP 2 Rate of Change Peak to Trough -9.7103 mV/ms
AP 2 AHP Depth 13.5193 mV
AP 1-2 Amplitude Change Percent -0.3899 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change 0.8047 %
AP 1-2 AHP Depth Percent Change 0.4475 %
Input Resistance 241.5938 MΩ
AP 1 Delay Mean 61.2900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 150.1600 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 88.9950 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 25.0000 %
Accommodation Rate to Steady State 0.1045 %/ms
Accommodation at Steady State Mean -21.1064 %
Accommodation Rate Mean at Steady State 6781.5082 ms
ISI CV 53.6040
ISI Median 91.6100 ms
ISI Burst Mean Change 0.2813 %
Spike Rate (Strong Stimulation) 25.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 20.8600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 59.2100 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 38.9500 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2147.0800 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 113.1060 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 9840.66 µm2
Number of Stems 7.0
Number of Bifurcations 36.0
Number of Branches 78.0
Overall Width 331.796 µm
Overall Height 688.938 µm
Overall Depth 122.95 µm
Average Diameter 1.21321 µm
Total Length 4921.54 µm
Total Surface 17545.6 µm2
Total Volume 7674.39 µm3
Max Euclidean Distance 580.363 µm
Max Path Distance 594.669 µm
Max Branch Order 7.0
Average Contraction 0.969181
Total Fragmentation 1862.0
Partition Asymmetry 0.477888
Average Rall's Ratio 1.82983
Average Bifurcation Angle Local 26.0225 °
Average Bifurcation Angle Remote 42.4335 °
Fractal Dimension 1.00516
Complexity Summary
State Equations 2411
Optimal Time-Step 0.00763 ms
Relative Complexity 570.84 HH
Model Size
Sections 81
Compartments 239
State Equations 2411
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00763 ms
Optimal Time-Step Error 0.09 %
Optimal Time-Step Benchmark Run Time 570.84 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.71 %
Max. Stable Time-Step Benchmark Run Time 1088.73 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14370 Hz
CVODE Steps Per AP 333
CVODE Benchmark Run Time 506.94 HH
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