Layer 5 Continuous Non-accommodating Nest Basket Cell (3)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 5
Keywords: continuous non-accommodating,Layer 5,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, nest, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000889
cNAC187_L5_NBC_a91e150b71_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000889
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.64 mV
Rheobase Current Interval (0.02472, 0.02541] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0232 nA
Testing Temperature 34.0 °C
Stability Interval [-0.9375, 15.0] nA
AP 1-2 Amplitude Drop 0.0418 mV
AP 1 Steady State Amplitude Change 0.2544 mV
AP 1 Amplitude 70.3807 mV
AP 1 Width at Half Height 0.6600 ms
AP 1 Width (Peak To Trough) 4.4100 ms
AP 1 Rate of Change Peak to Trough -20.3667 mV/ms
AP 1 AHP Depth 19.4364 mV
AP2 Amplitude 70.3389 mV
AP2 Width at Half Height 0.6700 ms
AP 2 Width (Peak to Trough) 4.5200 ms
AP 2 Rate of Change Peak to Trough -19.8485 mV/ms
AP 2 AHP Depth 19.3763 mV
AP 1-2 Amplitude Change Percent -0.0594 %
AP 1-2 Half Width Change Percent 1.5152 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.5443 %
AP 1-2 AHP Depth Percent Change -0.3093 %
Input Resistance 496.0540 MΩ
AP 1 Delay Mean 25.8100 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 77.8200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 52.3400 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -12.5000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0297 %/ms
Accommodation at Steady State Mean -16.9215 %
Accommodation Rate Mean at Steady State 1384.3110 ms
ISI CV 24.3256
ISI Median 57.1450 ms
ISI Burst Mean Change 1.2690 %
Spike Rate (Strong Stimulation) 34.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 9.0800 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 35.6500 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 27.1700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2074.6800 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 60.2291 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 6626.6 µm2
Number of Stems 6.0
Number of Bifurcations 27.0
Number of Branches 59.0
Overall Width 279.807 µm
Overall Height 605.587 µm
Overall Depth 133.62 µm
Average Diameter 0.567659 µm
Total Length 3725.96 µm
Total Surface 6855.15 µm2
Total Volume 3064.16 µm3
Max Euclidean Distance 502.137 µm
Max Path Distance 576.39 µm
Max Branch Order 7.0
Average Contraction 0.937132
Total Fragmentation 3386.0
Partition Asymmetry 0.701085
Average Rall's Ratio 0.708478
Average Bifurcation Angle Local 20.1891 °
Average Bifurcation Angle Remote 64.9413 °
Fractal Dimension 1.01304
Complexity Summary
State Equations 1921
Optimal Time-Step 0.00768 ms
Relative Complexity 469.28 HH
Model Size
Sections 60
Compartments 190
State Equations 1921
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00768 ms
Optimal Time-Step Error 0.24 %
Optimal Time-Step Benchmark Run Time 469.28 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.23 %
Max. Stable Time-Step Benchmark Run Time 900.49 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13692 Hz
CVODE Steps Per AP 586
CVODE Benchmark Run Time 463.31 HH
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