Layer 4 Continuous Non-accommodating Large Basket Cell (3)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 4
Keywords: continuous non-accommodating,Layer 4,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, large, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000839
cNAC187_L4_LBC_8e834c24cb_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000839
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.72 mV
Rheobase Current Interval (0.04486, 0.04646] nA
Threshold Current Interval (0.35156, 0.41016] nA
Bias Current (to -80.00 mV) -0.0429 nA
Testing Temperature 34.0 °C
Stability Interval [-3.4375, 15.0] nA
AP 1-2 Amplitude Drop 0.1168 mV
AP 1 Steady State Amplitude Change 0.2827 mV
AP 1 Amplitude 67.8662 mV
AP 1 Width at Half Height 0.5900 ms
AP 1 Width (Peak To Trough) 5.9300 ms
AP 1 Rate of Change Peak to Trough -15.0529 mV/ms
AP 1 AHP Depth 21.3974 mV
AP2 Amplitude 67.7494 mV
AP2 Width at Half Height 0.5900 ms
AP 2 Width (Peak to Trough) 5.9900 ms
AP 2 Rate of Change Peak to Trough -14.8690 mV/ms
AP 2 AHP Depth 21.3161 mV
AP 1-2 Amplitude Change Percent -0.1721 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.2214 %
AP 1-2 AHP Depth Percent Change -0.3800 %
Input Resistance 269.7249 MΩ
AP 1 Delay Mean 34.2800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 95.9500 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 61.9100 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State 0.0000 %/ms
Accommodation at Steady State Mean -12.5932 %
Accommodation Rate Mean at Steady State 1549.1200 ms
ISI CV 35.0126
ISI Median 65.6450 ms
ISI Burst Mean Change 0.7783 %
Spike Rate (Strong Stimulation) 31.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 12.2400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 42.8700 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 31.1250 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2088.2900 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 53.8832 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 15727.9 µm2
Number of Stems 9.0
Number of Bifurcations 31.0
Number of Branches 70.0
Overall Width 332.481 µm
Overall Height 535.524 µm
Overall Depth 245.71 µm
Average Diameter 0.962555 µm
Total Length 4709.23 µm
Total Surface 12264.9 µm2
Total Volume 7145.48 µm3
Max Euclidean Distance 380.628 µm
Max Path Distance 433.799 µm
Max Branch Order 6.0
Average Contraction 0.958824
Total Fragmentation 1350.0
Partition Asymmetry 0.459601
Average Rall's Ratio 1.0012
Average Bifurcation Angle Local 43.7183 °
Average Bifurcation Angle Remote 55.8914 °
Fractal Dimension 1.00669
Complexity Summary
State Equations 2381
Optimal Time-Step 0.00775 ms
Relative Complexity 556.45 HH
Model Size
Sections 70
Compartments 236
State Equations 2381
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.16 %
Optimal Time-Step Benchmark Run Time 556.45 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.01 %
Max. Stable Time-Step Benchmark Run Time 1078.03 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13227 Hz
CVODE Steps Per AP 609
CVODE Benchmark Run Time 547.93 HH
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