Layer 1 Continuous Non-accommodating Large Axon Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 1
Keywords: continuous non-accommodating,Layer 1,Rat, somatosensory cortex, neocortex, large axon
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000757
cNAC187_L1_DLAC_3a1208130a_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000757
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Non-accommodating Regular Spikers (naRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -69.14 mV
Rheobase Current Interval (0.01556, 0.01602] nA
Threshold Current Interval (0.05859, 0.11719] nA
Bias Current (to -80.00 mV) -0.0135 nA
Testing Temperature 34.0 °C
Stability Interval [-0.625, 15.0] nA
AP 1-2 Amplitude Drop 0.1885 mV
AP 1 Steady State Amplitude Change 0.4311 mV
AP 1 Amplitude 74.4296 mV
AP 1 Width at Half Height 0.6000 ms
AP 1 Width (Peak To Trough) 4.6200 ms
AP 1 Rate of Change Peak to Trough -21.0853 mV/ms
AP 1 AHP Depth 22.9847 mV
AP2 Amplitude 74.2411 mV
AP2 Width at Half Height 0.5900 ms
AP 2 Width (Peak to Trough) 4.5500 ms
AP 2 Rate of Change Peak to Trough -21.3854 mV/ms
AP 2 AHP Depth 23.0622 mV
AP 1-2 Amplitude Change Percent -0.2532 %
AP 1-2 Half Width Change Percent -1.6667 %
AP 1-2 Rate of Change Peak to Trough Percent Change 1.4229 %
AP 1-2 AHP Depth Percent Change 0.3374 %
Input Resistance 788.9173 MΩ
AP 1 Delay Mean 24.6100 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 76.6700 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 52.3350 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -25.0000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0258 %/ms
Accommodation at Steady State Mean -21.1143 %
Accommodation Rate Mean at Steady State 1279.1974 ms
ISI CV 18.3863
ISI Median 58.8200 ms
ISI Burst Mean Change 1.0565 %
Spike Rate (Strong Stimulation) 32.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 9.3700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 37.4400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 28.5200 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2109.5100 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 54.2866 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3670.02 µm2
Number of Stems 7.0
Number of Bifurcations 25.0
Number of Branches 56.0
Overall Width 165.958 µm
Overall Height 258.729 µm
Overall Depth 116.14 µm
Average Diameter 0.599601 µm
Total Length 1913.38 µm
Total Surface 3774.93 µm2
Total Volume 1607.25 µm3
Max Euclidean Distance 197.143 µm
Max Path Distance 255.13 µm
Max Branch Order 5.0
Average Contraction 0.911558
Total Fragmentation 1752.0
Partition Asymmetry 0.473333
Average Rall's Ratio 0.965789
Average Bifurcation Angle Local 12.8295 °
Average Bifurcation Angle Remote 78.7964 °
Fractal Dimension 1.01781
Complexity Summary
State Equations 991
Optimal Time-Step 0.00764 ms
Relative Complexity 232.71 HH
Model Size
Sections 57
Compartments 97
State Equations 991
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00764 ms
Optimal Time-Step Error 0.21 %
Optimal Time-Step Benchmark Run Time 232.71 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.90 %
Max. Stable Time-Step Benchmark Run Time 444.53 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14647 Hz
CVODE Steps Per AP 570
CVODE Benchmark Run Time 237.96 HH
Website & Images Copyright NeuroML © 2019 For questions: Contact us Links: Search Test |  ModelDB WS