Layer 2/3 Continuous Irregular Nest Basket Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 2
Neocortex Layer 3
Keywords: continuous irregular,Layer 2, Layer 3, Layer 2/3,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, nest, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000708
cIR216_L23_NBC_2ee5947bbf_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000708
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -77.27 mV
Rheobase Current Interval (0.11536, 0.11673] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -70.00 mV) 0.0292 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 5.0094 mV
AP 1 Steady State Amplitude Change 10.8888 mV
AP 1 Amplitude 87.3216 mV
AP 1 Width at Half Height 0.6300 ms
AP 1 Width (Peak To Trough) 2.7500 ms
AP 1 Rate of Change Peak to Trough -35.6115 mV/ms
AP 1 AHP Depth 10.6101 mV
AP2 Amplitude 82.3122 mV
AP2 Width at Half Height 0.6100 ms
AP 2 Width (Peak to Trough) 2.8300 ms
AP 2 Rate of Change Peak to Trough -33.5580 mV/ms
AP 2 AHP Depth 12.6569 mV
AP 1-2 Amplitude Change Percent -5.7368 %
AP 1-2 Half Width Change Percent -3.1746 %
AP 1-2 Rate of Change Peak to Trough Percent Change -5.7666 %
AP 1-2 AHP Depth Percent Change 19.2908 %
Input Resistance 330.5064 MΩ
AP 1 Delay Mean 9.6800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 23.3900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 15.3200 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.1280 %/ms
Accommodation at Steady State Mean -83.2185 %
Accommodation Rate Mean at Steady State 120.9154 ms
ISI CV 4.1245
ISI Median 50.0200 ms
ISI Burst Mean Change 23.4865 %
Spike Rate (Strong Stimulation) 47.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.2300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 11.6000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.6400 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2023.8300 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 104.8009 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 4653.43 µm2
Number of Stems 7.0
Number of Bifurcations 23.0
Number of Branches 52.0
Overall Width 449.905 µm
Overall Height 672.372 µm
Overall Depth 323.37 µm
Average Diameter 0.599818 µm
Total Length 5853.91 µm
Total Surface 9983.61 µm2
Total Volume 2604.65 µm3
Max Euclidean Distance 459.957 µm
Max Path Distance 638.809 µm
Max Branch Order 5.0
Average Contraction 0.960735
Total Fragmentation 1583.0
Partition Asymmetry 0.313527
Average Rall's Ratio 1.24536
Average Bifurcation Angle Local 45.074 °
Average Bifurcation Angle Remote 69.0243 °
Fractal Dimension 1.00716
Complexity Summary
State Equations 3286
Optimal Time-Step 0.00772 ms
Relative Complexity 825.85 HH
Model Size
Sections 53
Compartments 297
State Equations 3286
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00772 ms
Optimal Time-Step Error 0.33 %
Optimal Time-Step Benchmark Run Time 825.85 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 2.16 %
Max. Stable Time-Step Benchmark Run Time 1593.80 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 18395 Hz
CVODE Steps Per AP 239
CVODE Benchmark Run Time 871.57 HH
Website & Images Copyright NeuroML © 2022 For questions: Contact us Links: Search Test |  ModelDB WS