Layer 2/3 Continuous Accommodating Pyramidal Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 2
Neocortex Layer 3
Pyramidal Cell
Keywords: continuous accommodating for pyramidal cells,Layer 2, Layer 3, Layer 2/3,principal neuron, neocortex, rat, somatosensory cortex, pyramidal
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000638
cADpyr229_L23_PC_863902f300_0_0.cell.nml
( view NeuroML )
NMLCH000102
Ca_HVA.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000638
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Accommodating Wide AP Multi-Spikers (awMS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -72.61 mV
Rheobase Current Interval (0.05676, 0.05859] nA
Threshold Current Interval (0.41016, 0.46875] nA
Bias Current (to -80.00 mV) -0.0425 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop 1.3627 mV
AP 1 Steady State Amplitude Change 1.6515 mV
AP 1 Amplitude 95.2850 mV
AP 1 Width at Half Height 0.8900 ms
AP 1 Width (Peak To Trough) 56.2400 ms
AP 1 Rate of Change Peak to Trough -1.8919 mV/ms
AP 1 AHP Depth 11.1141 mV
AP2 Amplitude 93.9222 mV
AP2 Width at Half Height 0.9000 ms
AP 2 Width (Peak to Trough) 66.7500 ms
AP 2 Rate of Change Peak to Trough -1.6070 mV/ms
AP 2 AHP Depth 13.3480 mV
AP 1-2 Amplitude Change Percent -1.4302 %
AP 1-2 Half Width Change Percent 1.1236 %
AP 1-2 Rate of Change Peak to Trough Percent Change -15.0554 %
AP 1-2 AHP Depth Percent Change 20.1002 %
Input Resistance 174.1569 MΩ
AP 1 Delay Mean 42.4800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 442.5600 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 446.4850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State N/A %/ms
Accommodation at Steady State Mean -18.5140 %
Accommodation Rate Mean at Steady State 10.0000 ms
ISI CV 11.8907
ISI Median 490.0250 ms
ISI Burst Mean Change 23.1979 %
Spike Rate (Strong Stimulation) 3.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 12.9300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 170.9200 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 240.6700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2097.5300 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 4443.76 µm2
Number of Stems 8.0
Number of Bifurcations 37.0
Number of Branches 81.0
Overall Width 511.31 µm
Overall Height 431.829 µm
Overall Depth 278.67 µm
Average Diameter 0.702883 µm
Total Length 5678.88 µm
Total Surface 11427.1 µm2
Total Volume 3162.88 µm3
Max Euclidean Distance 407.381 µm
Max Path Distance 502.413 µm
Max Branch Order 9.0
Average Contraction 0.970103
Total Fragmentation 1777.0
Partition Asymmetry 0.394155
Average Rall's Ratio 1.76867
Average Bifurcation Angle Local 54.711 °
Average Bifurcation Angle Remote 56.1291 °
Fractal Dimension 1.00563
Complexity Summary
State Equations 1489
Optimal Time-Step 0.00762 ms
Relative Complexity 334.03 HH
Model Size
Sections 82
Compartments 292
State Equations 1489
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00762 ms
Optimal Time-Step Error 0.06 %
Optimal Time-Step Benchmark Run Time 334.03 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.41 %
Max. Stable Time-Step Benchmark Run Time 636.38 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 17229 Hz
CVODE Steps Per AP 805
CVODE Benchmark Run Time 423.21 HH
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