Layer 6 Continuous Accommodating Martinotti Cell (2)

Model Type:
Cell
Neurolex IDs: Martinotti Cell
Neocortex Layer 6
Keywords: continuous accommodating,Layer 6,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000618
cACint209_L6_MC_5597e4d536_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000618
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.93 mV
Rheobase Current Interval (0.01099, 0.01190] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0068 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 0.1580 mV
AP 1 Steady State Amplitude Change 0.5966 mV
AP 1 Amplitude 87.4055 mV
AP 1 Width at Half Height 0.5800 ms
AP 1 Width (Peak To Trough) 2.9000 ms
AP 1 Rate of Change Peak to Trough -37.1733 mV/ms
AP 1 AHP Depth 20.3971 mV
AP2 Amplitude 87.2475 mV
AP2 Width at Half Height 0.5800 ms
AP 2 Width (Peak to Trough) 2.9600 ms
AP 2 Rate of Change Peak to Trough -36.4004 mV/ms
AP 2 AHP Depth 20.4979 mV
AP 1-2 Amplitude Change Percent -0.1808 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.0791 %
AP 1-2 AHP Depth Percent Change 0.4939 %
Input Resistance 1195.8351 MΩ
AP 1 Delay Mean 73.8900 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 162.7500 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 91.6850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0199 %/ms
Accommodation at Steady State Mean -58.3637 %
Accommodation Rate Mean at Steady State 730.8053 ms
ISI CV 4.2783
ISI Median 159.4800 ms
ISI Burst Mean Change 6.3583 %
Spike Rate (Strong Stimulation) 13.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 25.4300 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 59.5300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 35.1350 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2132.4000 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 84.0537 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 5052.82 µm2
Number of Stems 6.0
Number of Bifurcations 16.0
Number of Branches 37.0
Overall Width 303.386 µm
Overall Height 514.335 µm
Overall Depth 107.38 µm
Average Diameter 0.746049 µm
Total Length 2780.71 µm
Total Surface 5514.36 µm2
Total Volume 2217.61 µm3
Max Euclidean Distance 447.702 µm
Max Path Distance 480.162 µm
Max Branch Order 4.0
Average Contraction 0.965348
Total Fragmentation 1636.0
Partition Asymmetry 0.4375
Average Rall's Ratio 1.15857
Average Bifurcation Angle Local 24.5599 °
Average Bifurcation Angle Remote 39.2438 °
Fractal Dimension 1.00579
Complexity Summary
State Equations 1401
Optimal Time-Step 0.00782 ms
Relative Complexity 333.16 HH
Model Size
Sections 38
Compartments 138
State Equations 1401
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00782 ms
Optimal Time-Step Error 0.10 %
Optimal Time-Step Benchmark Run Time 333.16 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.64 %
Max. Stable Time-Step Benchmark Run Time 651.13 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15168 Hz
CVODE Steps Per AP 508
CVODE Benchmark Run Time 346.88 HH
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