Layer 6 Continuous Accommodating Chandelier Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 6
Chandelier Cell
Keywords: continuous accommodating,Layer 6,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, chandelier
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000607
cACint209_L6_ChC_14a89428ba_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000607
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.62 mV
Rheobase Current Interval (0.01511, 0.01648] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -80.00 mV) -0.0115 nA
Testing Temperature 34.0 °C
Stability Interval [-2.1875, 15.0] nA
AP 1-2 Amplitude Drop -0.0918 mV
AP 1 Steady State Amplitude Change 0.1809 mV
AP 1 Amplitude 81.4414 mV
AP 1 Width at Half Height 0.5900 ms
AP 1 Width (Peak To Trough) 3.5700 ms
AP 1 Rate of Change Peak to Trough -29.7739 mV/ms
AP 1 AHP Depth 24.8512 mV
AP2 Amplitude 81.5332 mV
AP2 Width at Half Height 0.5900 ms
AP 2 Width (Peak to Trough) 3.5700 ms
AP 2 Rate of Change Peak to Trough -29.7554 mV/ms
AP 2 AHP Depth 24.6935 mV
AP 1-2 Amplitude Change Percent 0.1127 %
AP 1-2 Half Width Change Percent -0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.0620 %
AP 1-2 AHP Depth Percent Change -0.6346 %
Input Resistance 731.6678 MΩ
AP 1 Delay Mean 82.8500 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 183.9100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 104.6200 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean 0.0000 %
Accommodation Rate to Steady State 0.0000 %/ms
Accommodation at Steady State Mean -54.7523 %
Accommodation Rate Mean at Steady State 738.9541 ms
ISI CV 4.6718
ISI Median 171.9950 ms
ISI Burst Mean Change 7.0453 %
Spike Rate (Strong Stimulation) 11.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 29.7500 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 70.2600 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 41.5200 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2110.6000 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8533.04 µm2
Number of Stems 6.0
Number of Bifurcations 26.0
Number of Branches 57.0
Overall Width 278.536 µm
Overall Height 518.392 µm
Overall Depth 175.22 µm
Average Diameter 0.973974 µm
Total Length 2702.03 µm
Total Surface 8724.53 µm2
Total Volume 4788.76 µm3
Max Euclidean Distance 343.206 µm
Max Path Distance 403.649 µm
Max Branch Order 11.0
Average Contraction 0.934073
Total Fragmentation 2370.0
Partition Asymmetry 0.571072
Average Rall's Ratio 0.891538
Average Bifurcation Angle Local 44.5243 °
Average Bifurcation Angle Remote 74.3877 °
Fractal Dimension 1.01146
Complexity Summary
State Equations 1581
Optimal Time-Step 0.00777 ms
Relative Complexity 385.54 HH
Model Size
Sections 60
Compartments 156
State Equations 1581
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00777 ms
Optimal Time-Step Error 0.04 %
Optimal Time-Step Benchmark Run Time 385.54 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.55 %
Max. Stable Time-Step Benchmark Run Time 749.13 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15468 Hz
CVODE Steps Per AP 406
CVODE Benchmark Run Time 384.87 HH
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