Layer 5 Continuous Accommodating Neurogliaform Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 5
Keywords: continuous accommodating,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, neurogliaform
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000588
cACint209_L5_NGC_2ab508e906_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000588
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.95 mV
Rheobase Current Interval (0.00916, 0.01007] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0049 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop -0.6287 mV
AP 1 Steady State Amplitude Change 0.5346 mV
AP 1 Amplitude 72.5031 mV
AP 1 Width at Half Height 0.7700 ms
AP 1 Width (Peak To Trough) 6.3400 ms
AP 1 Rate of Change Peak to Trough -14.5613 mV/ms
AP 1 AHP Depth 19.8155 mV
AP2 Amplitude 73.1319 mV
AP2 Width at Half Height 0.7900 ms
AP 2 Width (Peak to Trough) 6.3700 ms
AP 2 Rate of Change Peak to Trough -14.4950 mV/ms
AP 2 AHP Depth 19.2014 mV
AP 1-2 Amplitude Change Percent 0.8672 %
AP 1-2 Half Width Change Percent 2.5974 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.4552 %
AP 1-2 AHP Depth Percent Change -3.0993 %
Input Resistance 1655.0449 MΩ
AP 1 Delay Mean 84.9300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 185.6000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 104.0650 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.0278 %/ms
Accommodation at Steady State Mean -50.9014 %
Accommodation Rate Mean at Steady State 655.3156 ms
ISI CV 5.1544
ISI Median 165.5450 ms
ISI Burst Mean Change 6.7448 %
Spike Rate (Strong Stimulation) 12.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 34.0900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 74.5000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 39.0700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2115.2600 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3387.44 µm2
Number of Stems 6.0
Number of Bifurcations 58.0
Number of Branches 121.0
Overall Width 115.043 µm
Overall Height 143.392 µm
Overall Depth 107.27 µm
Average Diameter 0.716829 µm
Total Length 2420.94 µm
Total Surface 5168.39 µm2
Total Volume 1714.82 µm3
Max Euclidean Distance 139.293 µm
Max Path Distance 173.338 µm
Max Branch Order 8.0
Average Contraction 0.962718
Total Fragmentation 1635.0
Partition Asymmetry 0.445327
Average Rall's Ratio 1.97923
Average Bifurcation Angle Local 30.281 °
Average Bifurcation Angle Remote 45.0806 °
Fractal Dimension 1.00965
Complexity Summary
State Equations 1511
Optimal Time-Step 0.00786 ms
Relative Complexity 358.60 HH
Model Size
Sections 121
Compartments 149
State Equations 1511
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00786 ms
Optimal Time-Step Error 0.04 %
Optimal Time-Step Benchmark Run Time 358.60 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.12 %
Max. Stable Time-Step Benchmark Run Time 704.29 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 16233 Hz
CVODE Steps Per AP 619
CVODE Benchmark Run Time 415.55 HH
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