Layer 5 Continuous Accommodating Bitufted Cell (2)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 5
Keywords: continuous accommodating,Layer 5,Rat, somatosensory cortex, bitufted
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000558
cACint209_L5_BTC_41f7db5b85_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000558
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -70.84 mV
Rheobase Current Interval (0.01007, 0.01099] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0089 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop -0.1507 mV
AP 1 Steady State Amplitude Change 0.3495 mV
AP 1 Amplitude 83.2358 mV
AP 1 Width at Half Height 0.6500 ms
AP 1 Width (Peak To Trough) 3.1400 ms
AP 1 Rate of Change Peak to Trough -31.9918 mV/ms
AP 1 AHP Depth 17.2185 mV
AP2 Amplitude 83.3865 mV
AP2 Width at Half Height 0.6600 ms
AP 2 Width (Peak to Trough) 3.1400 ms
AP 2 Rate of Change Peak to Trough -31.9538 mV/ms
AP 2 AHP Depth 16.9483 mV
AP 1-2 Amplitude Change Percent 0.1811 %
AP 1-2 Half Width Change Percent 1.5385 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.1189 %
AP 1-2 AHP Depth Percent Change -1.5691 %
Input Resistance 1071.7715 MΩ
AP 1 Delay Mean 102.6300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 211.3700 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 111.2900 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.0247 %/ms
Accommodation at Steady State Mean -45.4662 %
Accommodation Rate Mean at Steady State 1001.7978 ms
ISI CV 6.4521
ISI Median 151.9350 ms
ISI Burst Mean Change 4.6901 %
Spike Rate (Strong Stimulation) 13.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 36.1400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 76.2400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 41.0900 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2137.3700 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 80.5263 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 4079.79 µm2
Number of Stems 4.0
Number of Bifurcations 21.0
Number of Branches 45.0
Overall Width 300.427 µm
Overall Height 345.756 µm
Overall Depth 199.88 µm
Average Diameter 0.942035 µm
Total Length 3173.87 µm
Total Surface 7500.37 µm2
Total Volume 2666.25 µm3
Max Euclidean Distance 293.932 µm
Max Path Distance 345.289 µm
Max Branch Order 5.0
Average Contraction 0.93933
Total Fragmentation 699.0
Partition Asymmetry 0.212585
Average Rall's Ratio 1.9715
Average Bifurcation Angle Local 53.7028 °
Average Bifurcation Angle Remote 63.6959 °
Fractal Dimension 1.00406
Complexity Summary
State Equations 1561
Optimal Time-Step 0.00773 ms
Relative Complexity 367.65 HH
Model Size
Sections 46
Compartments 154
State Equations 1561
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00773 ms
Optimal Time-Step Error 0.12 %
Optimal Time-Step Benchmark Run Time 367.65 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.65 %
Max. Stable Time-Step Benchmark Run Time 710.35 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 15320 Hz
CVODE Steps Per AP 406
CVODE Benchmark Run Time 362.22 HH
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