Layer 4 Continuous Accommodating Neurogliaform Cell (3)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 4
Keywords: continuous accommodating,Layer 4,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, neurogliaform
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000544
cACint209_L4_NGC_5c53c04d48_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000544
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.48 mV
Rheobase Current Interval (0.02243, 0.02403] nA
Threshold Current Interval (0.35156, 0.41016] nA
Bias Current (to -80.00 mV) -0.0102 nA
Testing Temperature 34.0 °C
Stability Interval [-2.5, 15.0] nA
AP 1-2 Amplitude Drop 0.5861 mV
AP 1 Steady State Amplitude Change 0.8710 mV
AP 1 Amplitude 72.4828 mV
AP 1 Width at Half Height 0.7100 ms
AP 1 Width (Peak To Trough) 4.5200 ms
AP 1 Rate of Change Peak to Trough -19.5485 mV/ms
AP 1 AHP Depth 15.8762 mV
AP2 Amplitude 71.8967 mV
AP2 Width at Half Height 0.7000 ms
AP 2 Width (Peak to Trough) 4.5600 ms
AP 2 Rate of Change Peak to Trough -19.2639 mV/ms
AP 2 AHP Depth 15.9469 mV
AP 1-2 Amplitude Change Percent -0.8086 %
AP 1-2 Half Width Change Percent -1.4085 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.4554 %
AP 1-2 AHP Depth Percent Change 0.4449 %
Input Resistance 810.2850 MΩ
AP 1 Delay Mean 78.8200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 156.3200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 79.9100 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean 0.0000 %
Steady State Accommodation Mean -25.0000 %
Accommodation Rate to Steady State -0.0213 %/ms
Accommodation at Steady State Mean -44.0187 %
Accommodation Rate Mean at Steady State 748.3108 ms
ISI CV 6.4801
ISI Median 114.6300 ms
ISI Burst Mean Change 6.2194 %
Spike Rate (Strong Stimulation) 18.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 29.4900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 59.2400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 29.9700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2099.8100 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 77.2334 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 9850.78 µm2
Number of Stems 9.0
Number of Bifurcations 78.0
Number of Branches 164.0
Overall Width 131.058 µm
Overall Height 199.952 µm
Overall Depth 170.59 µm
Average Diameter 0.864296 µm
Total Length 4410.28 µm
Total Surface 10936.6 µm2
Total Volume 5046.48 µm3
Max Euclidean Distance 171.265 µm
Max Path Distance 251.868 µm
Max Branch Order 9.0
Average Contraction 0.961252
Total Fragmentation 1593.0
Partition Asymmetry 0.456598
Average Rall's Ratio 1.11713
Average Bifurcation Angle Local 27.8152 °
Average Bifurcation Angle Remote 69.6278 °
Fractal Dimension 1.00629
Complexity Summary
State Equations 2391
Optimal Time-Step 0.00775 ms
Relative Complexity 623.57 HH
Model Size
Sections 161
Compartments 237
State Equations 2391
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.05 %
Optimal Time-Step Benchmark Run Time 623.57 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.16 %
Max. Stable Time-Step Benchmark Run Time 1207.42 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 18355 Hz
CVODE Steps Per AP 339
CVODE Benchmark Run Time 690.59 HH
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