Layer 1 Continuous Accommodating Small Axon Cell (1)

Model Type:
Cell
Neurolex IDs: Neocortex Layer 1
Keywords: continuous accommodating,Layer 1,Rat, somatosensory cortex, neocortex, small axon
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000457
cACint209_L1_SLAC_0a908934ff_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000457
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Delayed Regular Spikers (dRS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -73.20 mV
Rheobase Current Interval (0.00824, 0.00870] nA
Threshold Current Interval (0.05859, 0.11719] nA
Bias Current (to -80.00 mV) -0.0044 nA
Testing Temperature 34.0 °C
Stability Interval [-0.625, 15.0] nA
AP 1-2 Amplitude Drop 0.5263 mV
AP 1 Steady State Amplitude Change 0.9653 mV
AP 1 Amplitude 91.5070 mV
AP 1 Width at Half Height 0.5300 ms
AP 1 Width (Peak To Trough) 3.0000 ms
AP 1 Rate of Change Peak to Trough -40.2333 mV/ms
AP 1 AHP Depth 29.1930 mV
AP2 Amplitude 90.9808 mV
AP2 Width at Half Height 0.5300 ms
AP 2 Width (Peak to Trough) 3.1600 ms
AP 2 Rate of Change Peak to Trough -38.1983 mV/ms
AP 2 AHP Depth 29.7258 mV
AP 1-2 Amplitude Change Percent -0.5751 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -5.0581 %
AP 1-2 AHP Depth Percent Change 1.8251 %
Input Resistance 1570.5468 MΩ
AP 1 Delay Mean 41.8400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 109.4100 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 77.8400 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -50.0000 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.0558 %/ms
Accommodation at Steady State Mean -80.9856 %
Accommodation Rate Mean at Steady State 309.7061 ms
ISI CV 2.7097
ISI Median 265.3600 ms
ISI Burst Mean Change 30.3981 %
Spike Rate (Strong Stimulation) 8.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 15.4700 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 46.2900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 32.9950 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2095.1600 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 121.8916 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 2937.52 µm2
Number of Stems 4.0
Number of Bifurcations 18.0
Number of Branches 39.0
Overall Width 125.17 µm
Overall Height 93.7287 µm
Overall Depth 123.68 µm
Average Diameter 0.942402 µm
Total Length 945.877 µm
Total Surface 2312.38 µm2
Total Volume 1177.29 µm3
Max Euclidean Distance 147.785 µm
Max Path Distance 161.71 µm
Max Branch Order 6.0
Average Contraction 0.962275
Total Fragmentation 400.0
Partition Asymmetry 0.567901
Average Rall's Ratio 2.482
Average Bifurcation Angle Local 94.3173 °
Average Bifurcation Angle Remote 99.2679 °
Fractal Dimension 1.00655
Complexity Summary
State Equations 571
Optimal Time-Step 0.00784 ms
Relative Complexity 128.99 HH
Model Size
Sections 41
Compartments 55
State Equations 571
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00784 ms
Optimal Time-Step Error 0.06 %
Optimal Time-Step Benchmark Run Time 128.99 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 0.97 %
Max. Stable Time-Step Benchmark Run Time 252.88 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 16058 Hz
CVODE Steps Per AP 427
CVODE Benchmark Run Time 135.24 HH
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