Layer 6 Burst Stuttering Martinotti Cell (3)

Model Type:
Cell
Neurolex IDs: Martinotti Cell
Neocortex Layer 6
Keywords: burst stuttering,Layer 6,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, Martinotti
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000444
bSTUT213_L6_MC_d379cda689_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCH000115
StochKv_deterministic.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000444
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Accommodating Fast Spikers (aFS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -75.20 mV
Rheobase Current Interval (0.10986, 0.11124] nA
Threshold Current Interval (0.29297, 0.35156] nA
Bias Current (to -70.00 mV) 0.0235 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop 1.8521 mV
AP 1 Steady State Amplitude Change 12.5161 mV
AP 1 Amplitude 70.2896 mV
AP 1 Width at Half Height 0.6100 ms
AP 1 Width (Peak To Trough) 2.9300 ms
AP 1 Rate of Change Peak to Trough -29.2165 mV/ms
AP 1 AHP Depth 15.3148 mV
AP2 Amplitude 68.4375 mV
AP2 Width at Half Height 0.6100 ms
AP 2 Width (Peak to Trough) 2.9700 ms
AP 2 Rate of Change Peak to Trough -28.4249 mV/ms
AP 2 AHP Depth 15.9844 mV
AP 1-2 Amplitude Change Percent -2.6350 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -2.7097 %
AP 1-2 AHP Depth Percent Change 4.3718 %
Input Resistance 279.0489 MΩ
AP 1 Delay Mean 8.0200 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 21.7400 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 14.5750 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -18.1818 %
Steady State Accommodation Mean -27.2727 %
Accommodation Rate to Steady State -0.1527 %/ms
Accommodation at Steady State Mean -85.3502 %
Accommodation Rate Mean at Steady State 69.9207 ms
ISI CV 3.7748
ISI Median 51.7900 ms
ISI Burst Mean Change 12.4636 %
Spike Rate (Strong Stimulation) 102.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.0000 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 11.1900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 8.3200 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2038.9500 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 4628.65 µm2
Number of Stems 4.0
Number of Bifurcations 47.0
Number of Branches 97.0
Overall Width 261.709 µm
Overall Height 416.492 µm
Overall Depth 123.79 µm
Average Diameter 0.651388 µm
Total Length 3753.29 µm
Total Surface 7033.27 µm2
Total Volume 2444.97 µm3
Max Euclidean Distance 361.557 µm
Max Path Distance 529.588 µm
Max Branch Order 8.0
Average Contraction 0.96602
Total Fragmentation 1842.0
Partition Asymmetry 0.51587
Average Rall's Ratio 2.26278
Average Bifurcation Angle Local 55.0027 °
Average Bifurcation Angle Remote 72.4741 °
Fractal Dimension 1.0061
Complexity Summary
State Equations 2241
Optimal Time-Step 0.00768 ms
Relative Complexity 597.28 HH
Model Size
Sections 98
Compartments 202
State Equations 2241
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00768 ms
Optimal Time-Step Error 0.30 %
Optimal Time-Step Benchmark Run Time 597.28 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.65 %
Max. Stable Time-Step Benchmark Run Time 1145.70 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 17905 Hz
CVODE Steps Per AP 179
CVODE Benchmark Run Time 593.75 HH
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