Layer 6 Burst Non-accommodating Small Basket Cell (4)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 6
Keywords: burst non-accommodating,Layer 6,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, small, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000405
bNAC219_L6_SBC_d20c9b88b4_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000405
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.66 mV
Rheobase Current Interval (0.02266, 0.02335] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0239 nA
Testing Temperature 34.0 °C
Stability Interval [-1.5625, 15.0] nA
AP 1-2 Amplitude Drop -0.5694 mV
AP 1 Steady State Amplitude Change 3.2392 mV
AP 1 Amplitude 63.3874 mV
AP 1 Width at Half Height 0.6700 ms
AP 1 Width (Peak To Trough) 2.6500 ms
AP 1 Rate of Change Peak to Trough -28.3468 mV/ms
AP 1 AHP Depth 11.7317 mV
AP2 Amplitude 63.9567 mV
AP2 Width at Half Height 0.6800 ms
AP 2 Width (Peak to Trough) 2.6600 ms
AP 2 Rate of Change Peak to Trough -28.1947 mV/ms
AP 2 AHP Depth 11.0412 mV
AP 1-2 Amplitude Change Percent 0.8982 %
AP 1-2 Half Width Change Percent 1.4925 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.5365 %
AP 1-2 AHP Depth Percent Change -5.8852 %
Input Resistance 503.2983 MΩ
AP 1 Delay Mean 33.3600 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 65.5900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 34.2050 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -42.8571 %
Steady State Accommodation Mean -42.8571 %
Accommodation Rate to Steady State -0.1144 %/ms
Accommodation at Steady State Mean -74.6068 %
Accommodation Rate Mean at Steady State 168.3177 ms
ISI CV 4.0659
ISI Median 95.1850 ms
ISI Burst Mean Change 12.2557 %
Spike Rate (Strong Stimulation) 31.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 11.3100 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 25.2900 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 14.5750 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2032.9100 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 124.0149 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 3701.37 µm2
Number of Stems 4.0
Number of Bifurcations 28.0
Number of Branches 59.0
Overall Width 246.661 µm
Overall Height 754.556 µm
Overall Depth 127.48 µm
Average Diameter 0.798289 µm
Total Length 3007.15 µm
Total Surface 7766.08 µm2
Total Volume 2969.43 µm3
Max Euclidean Distance 665.858 µm
Max Path Distance 708.697 µm
Max Branch Order 8.0
Average Contraction 0.930206
Total Fragmentation 2968.0
Partition Asymmetry 0.581143
Average Rall's Ratio 0.850625
Average Bifurcation Angle Local 31.896 °
Average Bifurcation Angle Remote 64.7815 °
Fractal Dimension 1.01409
Complexity Summary
State Equations 1561
Optimal Time-Step 0.00776 ms
Relative Complexity 340.35 HH
Model Size
Sections 60
Compartments 154
State Equations 1561
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00776 ms
Optimal Time-Step Error 0.32 %
Optimal Time-Step Benchmark Run Time 340.35 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.72 %
Max. Stable Time-Step Benchmark Run Time 660.16 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13786 Hz
CVODE Steps Per AP 362
CVODE Benchmark Run Time 302.32 HH
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