Layer 6 Burst Non-accommodating Large Basket Cell (5)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 6
Keywords: burst non-accommodating,Layer 6,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, large, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000391
bNAC219_L6_LBC_dbef3c6e51_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000391
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -70.59 mV
Rheobase Current Interval (0.04120, 0.04234] nA
Threshold Current Interval (0.23438, 0.29297] nA
Bias Current (to -80.00 mV) -0.0238 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop -0.7669 mV
AP 1 Steady State Amplitude Change 2.0348 mV
AP 1 Amplitude 65.7373 mV
AP 1 Width at Half Height 0.5900 ms
AP 1 Width (Peak To Trough) 2.8600 ms
AP 1 Rate of Change Peak to Trough -30.9438 mV/ms
AP 1 AHP Depth 22.7619 mV
AP2 Amplitude 66.5043 mV
AP2 Width at Half Height 0.6000 ms
AP 2 Width (Peak to Trough) 2.8600 ms
AP 2 Rate of Change Peak to Trough -30.9358 mV/ms
AP 2 AHP Depth 21.9721 mV
AP 1-2 Amplitude Change Percent 1.1667 %
AP 1-2 Half Width Change Percent 1.6949 %
AP 1-2 Rate of Change Peak to Trough Percent Change -0.0258 %
AP 1-2 AHP Depth Percent Change -3.4696 %
Input Resistance 400.4677 MΩ
AP 1 Delay Mean 27.5400 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 61.1900 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 35.4150 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.0808 %/ms
Accommodation at Steady State Mean -75.5155 %
Accommodation Rate Mean at Steady State 154.2358 ms
ISI CV 4.0643
ISI Median 100.6000 ms
ISI Burst Mean Change 10.4903 %
Spike Rate (Strong Stimulation) 30.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 7.9400 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 22.6000 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 15.0300 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2061.3900 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 11240.9 µm2
Number of Stems 7.0
Number of Bifurcations 20.0
Number of Branches 46.0
Overall Width 291.834 µm
Overall Height 630.817 µm
Overall Depth 89.61 µm
Average Diameter 0.851637 µm
Total Length 3090.53 µm
Total Surface 8245.89 µm2
Total Volume 5549.23 µm3
Max Euclidean Distance 410.377 µm
Max Path Distance 498.636 µm
Max Branch Order 4.0
Average Contraction 0.966126
Total Fragmentation 3042.0
Partition Asymmetry 0.51
Average Rall's Ratio 0.850833
Average Bifurcation Angle Local 30.9974 °
Average Bifurcation Angle Remote 55.9504 °
Fractal Dimension 1.00761
Complexity Summary
State Equations 1591
Optimal Time-Step 0.00775 ms
Relative Complexity 371.98 HH
Model Size
Sections 47
Compartments 157
State Equations 1591
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00775 ms
Optimal Time-Step Error 0.21 %
Optimal Time-Step Benchmark Run Time 371.98 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.35 %
Max. Stable Time-Step Benchmark Run Time 720.28 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13534 Hz
CVODE Steps Per AP 442
CVODE Benchmark Run Time 340.24 HH
Website & Images Copyright NeuroML © 2020 For questions: Contact us Links: Search Test |  ModelDB WS