Layer 5 Burst Non-accommodating Bipolar Cell (4)

Model Type:
Cell
Neurolex IDs: Bipolar Cell
Neocortex Layer 5
Keywords: burst non-accommodating,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, bipolar
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000360
bNAC219_L5_BP_b022a66bd2_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000360
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.96 mV
Rheobase Current Interval (0.01167, 0.01236] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0147 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 0.1710 mV
AP 1 Steady State Amplitude Change 1.8262 mV
AP 1 Amplitude 65.5714 mV
AP 1 Width at Half Height 0.6400 ms
AP 1 Width (Peak To Trough) 2.5200 ms
AP 1 Rate of Change Peak to Trough -29.5565 mV/ms
AP 1 AHP Depth 8.9111 mV
AP2 Amplitude 65.4004 mV
AP2 Width at Half Height 0.6500 ms
AP 2 Width (Peak to Trough) 2.5600 ms
AP 2 Rate of Change Peak to Trough -29.0092 mV/ms
AP 2 AHP Depth 8.8633 mV
AP 1-2 Amplitude Change Percent -0.2608 %
AP 1-2 Half Width Change Percent 1.5625 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.8517 %
AP 1-2 AHP Depth Percent Change -0.5362 %
Input Resistance 806.8691 MΩ
AP 1 Delay Mean 57.7300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 104.8200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 49.5300 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.0669 %/ms
Accommodation at Steady State Mean -65.1021 %
Accommodation Rate Mean at Steady State 220.6811 ms
ISI CV 4.5294
ISI Median 111.9000 ms
ISI Burst Mean Change 10.3631 %
Spike Rate (Strong Stimulation) 19.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 19.7900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 36.5400 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 17.5800 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2076.5800 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 1850.73 µm2
Number of Stems 5.0
Number of Bifurcations 30.0
Number of Branches 64.0
Overall Width 302.56 µm
Overall Height 318.586 µm
Overall Depth 247.02 µm
Average Diameter 0.633331 µm
Total Length 3417.84 µm
Total Surface 6017.3 µm2
Total Volume 1289.59 µm3
Max Euclidean Distance 276.163 µm
Max Path Distance 326.892 µm
Max Branch Order 6.0
Average Contraction 0.971593
Total Fragmentation 1022.0
Partition Asymmetry 0.369444
Average Rall's Ratio 1.11375
Average Bifurcation Angle Local 31.9542 °
Average Bifurcation Angle Remote 48.9726 °
Fractal Dimension 1.00562
Complexity Summary
State Equations 1711
Optimal Time-Step 0.00780 ms
Relative Complexity 406.61 HH
Model Size
Sections 65
Compartments 169
State Equations 1711
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00780 ms
Optimal Time-Step Error 0.38 %
Optimal Time-Step Benchmark Run Time 406.61 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.43 %
Max. Stable Time-Step Benchmark Run Time 793.03 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14382 Hz
CVODE Steps Per AP 304
CVODE Benchmark Run Time 363.54 HH
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