Layer 5 Burst Non-accommodating Bipolar Cell (2)

Model Type:
Cell
Neurolex IDs: Bipolar Cell
Neocortex Layer 5
Keywords: burst non-accommodating,Layer 5,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, bipolar, biophysical, burst non-accommodating bipolar cell, Realistic Network, Neuron or other electrically excitable cell, Synapse, Spatio-temporal Activity Patterns, Detailed Neuronal Models
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000358
bNAC219_L5_BP_77ea5abf2a_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000358
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -68.93 mV
Rheobase Current Interval (0.01167, 0.01236] nA
Threshold Current Interval (0.11719, 0.17578] nA
Bias Current (to -80.00 mV) -0.0149 nA
Testing Temperature 34.0 °C
Stability Interval [-1.25, 15.0] nA
AP 1-2 Amplitude Drop 0.1167 mV
AP 1 Steady State Amplitude Change 1.9012 mV
AP 1 Amplitude 65.1311 mV
AP 1 Width at Half Height 0.6600 ms
AP 1 Width (Peak To Trough) 2.6400 ms
AP 1 Rate of Change Peak to Trough -27.9180 mV/ms
AP 1 AHP Depth 8.5724 mV
AP2 Amplitude 65.0144 mV
AP2 Width at Half Height 0.6500 ms
AP 2 Width (Peak to Trough) 2.6900 ms
AP 2 Rate of Change Peak to Trough -27.3913 mV/ms
AP 2 AHP Depth 8.6681 mV
AP 1-2 Amplitude Change Percent -0.1792 %
AP 1-2 Half Width Change Percent -1.5152 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.8867 %
AP 1-2 AHP Depth Percent Change 1.1164 %
Input Resistance 802.8239 MΩ
AP 1 Delay Mean 57.7700 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 104.5000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 49.1850 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -33.3333 %
Accommodation Rate to Steady State -0.0669 %/ms
Accommodation at Steady State Mean -65.5279 %
Accommodation Rate Mean at Steady State 218.8330 ms
ISI CV 4.5000
ISI Median 112.0900 ms
ISI Burst Mean Change 10.5072 %
Spike Rate (Strong Stimulation) 19.5000 Hz
AP 1 Delay Mean (Strong Stimulation) 19.8200 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 36.4600 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 17.4700 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2076.3600 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 1850.73 µm2
Number of Stems 5.0
Number of Bifurcations 30.0
Number of Branches 64.0
Overall Width 328.651 µm
Overall Height 336.142 µm
Overall Depth 286.26 µm
Average Diameter 0.633331 µm
Total Length 3408.52 µm
Total Surface 6034.43 µm2
Total Volume 1298.43 µm3
Max Euclidean Distance 292.534 µm
Max Path Distance 302.22 µm
Max Branch Order 6.0
Average Contraction 0.971612
Total Fragmentation 1022.0
Partition Asymmetry 0.369444
Average Rall's Ratio 1.11375
Average Bifurcation Angle Local 34.2827 °
Average Bifurcation Angle Remote 49.3353 °
Fractal Dimension 1.00566
Complexity Summary
Relative Complexity 373.60 HH
State Equations 1751
Optimal Time-Step 0.00769 ms
Model Size
Sections 65
Compartments 173
State Equations 1751
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14507 Hz
CVODE Steps Per AP 285
CVODE Benchmark Run Time 373.60 HH
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