Layer 4 Burst Non-accommodating Bipolar Cell (2)

Model Type:
Cell
Neurolex IDs: Bipolar Cell
Neocortex Layer 4
Keywords: burst non-accommodating,Layer 4,GABAergic, inhibitory, neocortex, rat, somatosensory cortex, bipolar
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000333
bNAC219_L4_BP_a90620dca0_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000333
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Bursters (B)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -69.76 mV
Rheobase Current Interval (0.01190, 0.01213] nA
Threshold Current Interval (0.00000, 0.05859] nA
Bias Current (to -80.00 mV) -0.0096 nA
Testing Temperature 34.0 °C
Stability Interval [-0.3125, 15.0] nA
AP 1-2 Amplitude Drop -0.1514 mV
AP 1 Steady State Amplitude Change 3.4282 mV
AP 1 Amplitude 81.6287 mV
AP 1 Width at Half Height 0.4200 ms
AP 1 Width (Peak To Trough) 1.7200 ms
AP 1 Rate of Change Peak to Trough -61.3985 mV/ms
AP 1 AHP Depth 23.9768 mV
AP2 Amplitude 81.7800 mV
AP2 Width at Half Height 0.4200 ms
AP 2 Width (Peak to Trough) 1.6800 ms
AP 2 Rate of Change Peak to Trough -62.9309 mV/ms
AP 2 AHP Depth 23.9438 mV
AP 1-2 Amplitude Change Percent 0.1854 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change 2.4958 %
AP 1-2 AHP Depth Percent Change -0.1374 %
Input Resistance 1054.7573 MΩ
AP 1 Delay Mean 12.9300 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 31.4200 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 29.6550 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -40.0000 %
Steady State Accommodation Mean -40.0000 %
Accommodation Rate to Steady State -0.1994 %/ms
Accommodation at Steady State Mean -91.9574 %
Accommodation Rate Mean at Steady State 89.7438 ms
ISI CV 3.4780
ISI Median 133.1850 ms
ISI Burst Mean Change 120.7680 %
Spike Rate (Strong Stimulation) 16.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 3.1900 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 13.7300 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 10.9550 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2033.1400 ms
Frequency Filter Type Low-Pass
Frequency Filter Pass Below 120.3653 Hz
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 2094.2 µm2
Number of Stems 2.0
Number of Bifurcations 7.0
Number of Branches 15.0
Overall Width 58.9926 µm
Overall Height 769.379 µm
Overall Depth 23.91 µm
Average Diameter 1.07428 µm
Total Length 1087.74 µm
Total Surface 2271.39 µm2
Total Volume 849.369 µm3
Max Euclidean Distance 785.717 µm
Max Path Distance 802.002 µm
Max Branch Order 6.0
Average Contraction 0.990257
Total Fragmentation 256.0
Partition Asymmetry 0.857143
Average Rall's Ratio 1.51667
Average Bifurcation Angle Local 48.2416 °
Average Bifurcation Angle Remote 45.5152 °
Fractal Dimension 1.00199
Complexity Summary
State Equations 581
Optimal Time-Step 0.00515 ms
Relative Complexity 195.60 HH
Model Size
Sections 16
Compartments 56
State Equations 581
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00515 ms
Optimal Time-Step Error 0.07 %
Optimal Time-Step Benchmark Run Time 195.60 HH
 
Maximum Stable Time-Step 0.03125 ms
Maximum Stable Time-Step Error 1.24 %
Max. Stable Time-Step Benchmark Run Time 503.62 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 14381 Hz
CVODE Steps Per AP 414
CVODE Benchmark Run Time 122.69 HH
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