Layer 2/3 Burst Non-accommodating Nest Basket Cell (5)

Model Type:
Cell
Neurolex IDs: Neocortex basket cell
Neocortex Layer 2
Neocortex Layer 3
Keywords: burst non-accommodating,Layer 2, Layer 3, Layer 2/3,Fast-spiking, interneuron, GABAergic, inhibitory, neocortex, rat, somatosensory cortex, nest, basket
Publication: Markram, et. al. (2015) Reconstruction and Simulation of Neocortical Microcircuitry.
Authors:
H Markram   Eilif Muller   Srikanth Ramaswamy   Michael Reimann   Marwan Abdellah   Carlos Sanchez   Anastasia Ailamaki   Lidia Alonso-Nanclares   Nicolas Antille   Selim Arsever   Guy Kahou   Thomas Berger   Ahmet Bilgili   Nenad Buncic   Athanassia Chalimourda   Giuseppe Chindemi   Jean-Denis Courcol   Fabien Delalondre   Vincent Delattre   Shaul Druckmann   Raphael Dumusc   James Dynes   Stefan Eilemann   Eyal Gal   Michael Gevaert   Jean-Pierre Ghobril   Albert Gidon   Joe Graham   Anirudh Gupta   Valentin Haenel   E Hay   Thomas Heinis   Juan Hernando   Michael Hines   Lida Kanari   Daniel Keller   John Kenyon   Georges Khazen   Yihwa Kim   James King   Zoltan Kisvarday   Pramod Kumbhar   Jean-Vincent Le Bé   Bruno Magalhães   Angel Merchán-Pérez   Julie Meystre   Benjamin Morrice   Jeffrey Muller   Alberto Muñoz-Céspedes   Shruti Muralidhar   Keerthan Muthurasa   Daniel Nachbaur   Taylor Newton   Max Nolte   Aleksandr Ovcharenko   Juan Palacios   Luis Pastor   Rodrigo Perin   Rajnish Ranjan   Imad Riachi   Juan Riquelme   Christian Rössert   Konstantinos Sfyrakis   Ying Shi   Julian Shillcock   Gilad Silberberg   Ricardo Silva   Farhan Tauheed   Martin Telefont   Maria Toledo-Rodriguez   Thomas Tränkler   Werner Van Geit   Jafet Diaz   Richard Walker   Yun Wang   Stefano Zaninetta   Javier DeFelipe   S Hill   Idan Segev   F Schürmann  
Translators: Padraig Gleeson  
Sources:
Files:
Model ID NeuroML File
NMLCL000321
bNAC219_L23_NBC_ff73785e1d_0_0.cell.nml
( view NeuroML )
NMLCH000101
Ca.channel.nml
( view NeuroML )
NMLCH000103
Ca_LVAst.channel.nml
( view NeuroML )
NMLCH000104
Ih.channel.nml
( view NeuroML )
NMLCH000105
Im.channel.nml
( view NeuroML )
NMLCH000107
K_Pst.channel.nml
( view NeuroML )
NMLCH000108
K_Tst.channel.nml
( view NeuroML )
NMLCH000109
Nap_Et2.channel.nml
( view NeuroML )
NMLCH000110
NaTa_t.channel.nml
( view NeuroML )
NMLCH000111
NaTs2_t.channel.nml
( view NeuroML )
NMLCH000112
SK_E2.channel.nml
( view NeuroML )
NMLCH000113
SKv3_1.channel.nml
( view NeuroML )
NMLCH000114
pas.channel.nml
( view NeuroML )
NMLCN000001
CaDynamics_E2_NML2.nml
( view NeuroML )
Notes: None
Model Id: NMLCL000321
Associated Channels:
Associated Synapses: None
Associated Networks: None
Current Clamp Response
Protocol:
Meta Protocol: -
Stimulus: -
Closest Electrophysiology Cluster
⇛Multi-Spikers (MS)
   ⇛Regular Multi-Spikers (rMS)
      ⇛Regular Spikers (RS)
Differentiating Features
Models with Similar Electrophysiology Properties
All Electrophysiology Properties
Is Passive No
Is Intrinsically Spiking No
Resting Voltage -71.13 mV
Rheobase Current Interval (0.03571, 0.03662] nA
Threshold Current Interval (0.17578, 0.23438] nA
Bias Current (to -80.00 mV) -0.0171 nA
Testing Temperature 34.0 °C
Stability Interval [-1.875, 15.0] nA
AP 1-2 Amplitude Drop 0.3852 mV
AP 1 Steady State Amplitude Change 4.5026 mV
AP 1 Amplitude 60.8639 mV
AP 1 Width at Half Height 0.7700 ms
AP 1 Width (Peak To Trough) 4.4100 ms
AP 1 Rate of Change Peak to Trough -17.4639 mV/ms
AP 1 AHP Depth 16.1521 mV
AP2 Amplitude 60.4787 mV
AP2 Width at Half Height 0.7700 ms
AP 2 Width (Peak to Trough) 4.4800 ms
AP 2 Rate of Change Peak to Trough -17.1523 mV/ms
AP 2 AHP Depth 16.3638 mV
AP 1-2 Amplitude Change Percent -0.6329 %
AP 1-2 Half Width Change Percent 0.0000 %
AP 1-2 Rate of Change Peak to Trough Percent Change -1.7843 %
AP 1-2 AHP Depth Percent Change 1.3106 %
Input Resistance 525.0224 MΩ
AP 1 Delay Mean 21.9800 ms
AP 1 Delay SD 0.0000 ms
AP 2 Delay Mean 53.5000 ms
AP 2 Delay SD 0.0000 ms
Burst 1 ISI Mean 33.7450 ms
Burst 1 ISI SD 0.0000 ms
Initial Accommodation Mean -33.3333 %
Steady State Accommodation Mean -50.0000 %
Accommodation Rate to Steady State -0.1474 %/ms
Accommodation at Steady State Mean -78.8753 %
Accommodation Rate Mean at Steady State 124.2643 ms
ISI CV 3.9681
ISI Median 102.8250 ms
ISI Burst Mean Change 14.1180 %
Spike Rate (Strong Stimulation) 36.0000 Hz
AP 1 Delay Mean (Strong Stimulation) 8.0600 ms
AP 1 Delay SD (Strong Stimulation) 0.0000 ms
AP 2 Delay Mean (Strong Stimulation) 23.5700 ms
AP 2 Delay SD (Strong Stimulation) 0.0000 ms
Burst 1 ISI Mean (Strong Stimulation) 16.0550 ms
Burst 1 ISI SD (Strong Stimulation) 0.0000 ms
Ramp First Spike Time 2046.3700 ms
Frequency Filter Type Constant
3D Structure and Propagation of Activity
L-Measure Properties
Soma Surface 8107.62 µm2
Number of Stems 8.0
Number of Bifurcations 24.0
Number of Branches 55.0
Overall Width 157.611 µm
Overall Height 214.139 µm
Overall Depth 130.01 µm
Average Diameter 0.946172 µm
Total Length 2562.81 µm
Total Surface 5865.31 µm2
Total Volume 3342.08 µm3
Max Euclidean Distance 191.019 µm
Max Path Distance 216.319 µm
Max Branch Order 6.0
Average Contraction 0.978409
Total Fragmentation 796.0
Partition Asymmetry 0.441667
Average Rall's Ratio 1.35625
Average Bifurcation Angle Local 62.7513 °
Average Bifurcation Angle Remote 65.8899 °
Fractal Dimension 1.00326
Complexity Summary
State Equations 1321
Optimal Time-Step 0.00764 ms
Relative Complexity 306.59 HH
Model Size
Sections 56
Compartments 130
State Equations 1321
Fixed Time-Step Run Time vs. Voltage Potential Error
Run Time-vs-Error Optimal Time-Step 0.00764 ms
Optimal Time-Step Error 0.24 %
Optimal Time-Step Benchmark Run Time 306.59 HH
 
Maximum Stable Time-Step 0.0625 ms
Maximum Stable Time-Step Error 1.24 %
Max. Stable Time-Step Benchmark Run Time 585.26 HH
Variable Time-Step Complexity
CVODE Steady State Step Frequency 13059 Hz
CVODE Steps Per AP 406
CVODE Benchmark Run Time 263.67 HH
Website & Images Copyright NeuroML © 2020 For questions: Contact us Links: Search Test |  ModelDB WS